fix: Update docs site links to point to stable (#1564)

frontend/packages/data-portal/app/components/Layout/Footer.tsx

@@ -14,15 +14,15 @@ const DEV_LINKS = [
   },
   {
     label: i18n.api,
-    href: 'https://chanzuckerberg.github.io/cryoet-data-portal/python-api.html',
+    href: 'https://chanzuckerberg.github.io/cryoet-data-portal/stable/python-api.html',
   },
   {
     label: i18n.napariPlugin,
-    href: 'https://chanzuckerberg.github.io/cryoet-data-portal/cryoet_data_portal_docsite_napari.html',
+    href: 'https://chanzuckerberg.github.io/cryoet-data-portal/stable/cryoet_data_portal_docsite_napari.html',
   },
   {
     label: i18n.documentation,
-    href: 'https://chanzuckerberg.github.io/cryoet-data-portal/index.html',
+    href: 'https://chanzuckerberg.github.io/cryoet-data-portal/stable/index.html',
   },
 ]
 

frontend/packages/data-portal/app/components/Layout/constants.ts

@@ -30,11 +30,11 @@ export const TOP_LEVEL_LINKS: TopNavLink[] = [
 export const TOOLS_LINKS: NavLink[] = [
   {
     label: 'api',
-    link: 'https://chanzuckerberg.github.io/cryoet-data-portal/python-api.html',
+    link: 'https://chanzuckerberg.github.io/cryoet-data-portal/stable/python-api.html',
   },
   {
     label: 'napariPlugin',
-    link: 'https://chanzuckerberg.github.io/cryoet-data-portal/cryoet_data_portal_docsite_napari.html',
+    link: 'https://chanzuckerberg.github.io/cryoet-data-portal/stable/cryoet_data_portal_docsite_napari.html',
   },
 ]
 

frontend/packages/data-portal/app/components/MLChallenge/MdxContent/WhatIsCryoET.mdx

@@ -6,7 +6,7 @@ Cryo-electron tomography (CryoET) is an imaging technique that enables 3D visual
 
 A given tomogram is typically only about 200 nanometers thick—approximately five hundred times thinner than a sheet of paper—yet packed with information about the structures of the cellular machinery driving health and disease.
 
-For more information about CryoET basics, check out [the educational articles from the CryoET Data Portal documentation site](https://chanzuckerberg.github.io/cryoet-data-portal/about.html).
+For more information about CryoET basics, check out [the educational articles from the CryoET Data Portal documentation site](https://chanzuckerberg.github.io/cryoet-data-portal/stable/about.html).
 
 ### Current Barriers
 

frontend/packages/data-portal/app/constants/siteLinks.ts

@@ -2,7 +2,7 @@ export enum SiteLinks {
   HOME = '/',
   COMPETITION = '/competition',
   BROWSE_DATA_DATASETS = '/browse-data/datasets',
-  FAQ = 'https://chanzuckerberg.github.io/cryoet-data-portal/cryoet_data_portal_docsite_faq.html',
+  FAQ = 'https://chanzuckerberg.github.io/cryoet-data-portal/stable/cryoet_data_portal_docsite_faq.html',
   PRIVACY = '/privacy',
   DATA_SUBMISSION_POLICY = '/data-submission-policy',
 }

frontend/packages/data-portal/app/routes/browse-data.datasets.tsx

@@ -100,7 +100,7 @@ export default function BrowseDatasetsPage() {
           title: t('datasets'),
           description: t('datasetsDescription'),
           learnMoreLink:
-            'https://chanzuckerberg.github.io/cryoet-data-portal/cryoet_data_portal_docsite_data.html#datasets',
+            'https://chanzuckerberg.github.io/cryoet-data-portal/stable/cryoet_data_portal_docsite_data.html#datasets',
           filterPanel: <DatasetFilter />,
           table: <DatasetTable />,
           noFilteredResults: <NoFilteredResults showSearchTip />,

frontend/packages/data-portal/app/routes/browse-data.depositions.tsx

@@ -75,7 +75,7 @@ export default function BrowseDepositionsPage() {
           title: t('depositions'),
           description: t('depositionsDescription'),
           learnMoreLink:
-            'https://chanzuckerberg.github.io/cryoet-data-portal/cryoet_data_portal_docsite_data.html#depositions',
+            'https://chanzuckerberg.github.io/cryoet-data-portal/stable/cryoet_data_portal_docsite_data.html#depositions',
           table: <DepositionTable />,
           filteredCount: filteredDepositionCount,
           totalCount: totalDepositionCount,

frontend/packages/data-portal/public/locales/en/translation.json

@@ -39,11 +39,11 @@
   "annotationOverview": "Annotation Overview",
   "annotationSoftware": "Annotation Software",
   "annotations": "Annotations",
-  "annotationsMayRequireTransformation": "Annotations may require transformation if the desired tomogram has a different Alignment ID. <url to='https://chanzuckerberg.github.io/cryoet-data-portal/cryoet_data_portal_docsite_data.html#annotations'>Learn about annotation transformation.</url>",
+  "annotationsMayRequireTransformation": "Annotations may require transformation if the desired tomogram has a different Alignment ID. <url to='https://chanzuckerberg.github.io/cryoet-data-portal/stable/cryoet_data_portal_docsite_data.html#annotations'>Learn about annotation transformation.</url>",
   "annotationsSummary": "Annotations Summary",
   "annotationsTotal": "Annotations (Total)",
   "api": "API",
-  "apiDocLink": "https://chanzuckerberg.github.io/cryoet-data-portal/python-api.html",
+  "apiDocLink": "https://chanzuckerberg.github.io/cryoet-data-portal/stable/python-api.html",
   "apply": "Apply",
   "askOnGithub": "Ask a Question on GitHub",
   "author": "Author",
@@ -311,7 +311,7 @@
   "portalStandardTooltip": "<semibold>Portal Standard:</semibold> Tomogram contributed by the Data Portal with standard voxel size.",
   "postProcessing": "Post Processing",
   "precision": "Precision",
-  "precisionTooltip": "<semibold>Precision:</semibold> Percentage of true positives among the total number of positive predictions. A value of 100% means everything found is actually the object of interest. <url to='https://chanzuckerberg.github.io/cryoet-data-portal/cryoet_data_portal_docsite_data.html#annotations'>Learn More</url>",
+  "precisionTooltip": "<semibold>Precision:</semibold> Percentage of true positives among the total number of positive predictions. A value of 100% means everything found is actually the object of interest. <url to='https://chanzuckerberg.github.io/cryoet-data-portal/stable/cryoet_data_portal_docsite_data.html#annotations'>Learn More</url>",
   "preferToDownloadViaApi": "<semibold>Prefer to download via our API?</semibold> Record the IDs below and visit our <url to='$t(apiDocLink)'>API documentation</url> to learn how.",
   "preferToDownloadViaApiCode": "<semibold>Prefer to download via our API?</semibold> Record the code snippet below and visit our <url to='$t(apiDocLink)'>API documentation</url> to learn how.",
   "primaryAuthor": "Primary Author",
@@ -349,7 +349,7 @@
   "runOverview": "Run Overview",
   "runs": "Runs",
   "runsTab": "Runs {{count}}",
-  "runsTooltip": "<semibold>Run:</semibold> A tomography run is a collection of all data and annotations related to one physical location in a biological specimen. <url to='https://chanzuckerberg.github.io/cryoet-data-portal/cryoet_data_portal_docsite_faq.html?target=data-schema&status=open' target='_blank' rel='noreferrer'>Learn More</url>",
+  "runsTooltip": "<semibold>Run:</semibold> A tomography run is a collection of all data and annotations related to one physical location in a biological specimen. <url to='https://chanzuckerberg.github.io/cryoet-data-portal/stable/cryoet_data_portal_docsite_faq.html?target=data-schema&status=open' target='_blank' rel='noreferrer'>Learn More</url>",
   "runsTooltipDepositionSubtext": "Count only shows the number of runs containing deposition data. <urlNoColor to='$t(urlDepositionsDocumentation)' variant='dashed-underlined'>Learn more about depositions in the portal</urlNoColor>.",
   "sampleAndExperimentConditions": "Sample and Experiment Conditions",
   "samplePreparation": "Sample Preparation",
@@ -364,7 +364,7 @@
   "selectDownload": "Select Download",
   "selectDownloadMethod": "Select Download Method",
   "selectSaveDestination": "Select Save Destination",
-  "selectTheTomogramToReferenceWith": "Select the tomogram to reference with these annotations. For tomograms other than the Portal Standard, annotations may require transformation to be compatible. <url to='https://chanzuckerberg.github.io/cryoet-data-portal/cryoet_data_portal_docsite_data.html#annotations'>Learn More</url>.",
+  "selectTheTomogramToReferenceWith": "Select the tomogram to reference with these annotations. For tomograms other than the Portal Standard, annotations may require transformation to be compatible. <url to='https://chanzuckerberg.github.io/cryoet-data-portal/stable/cryoet_data_portal_docsite_data.html#annotations'>Learn More</url>.",
   "selectTomogram": "Select Tomogram",
   "seriesIsAligned": "Series is Aligned",
   "showAll": "Show all",
@@ -406,7 +406,7 @@
   "tiltSeriesId": "Tilt Series ID",
   "tiltSeriesMetadata": "Tilt Series Metadata",
   "tiltSeriesQualityScore": "Tilt Series Quality Score",
-  "tiltSeriesTooltip": "<semibold>Tilt Series Quality:</semibold> Dataset author's assessment of tilt series quality. Score ranges 1-5, with 5 being best. <url to='https://chanzuckerberg.github.io/cryoet-data-portal/cryoet_data_portal_docsite_data.html#tilt-series-quality'>Learn More</url>",
+  "tiltSeriesTooltip": "<semibold>Tilt Series Quality:</semibold> Dataset author's assessment of tilt series quality. Score ranges 1-5, with 5 being best. <url to='https://chanzuckerberg.github.io/cryoet-data-portal/stable/cryoet_data_portal_docsite_data.html#tilt-series-quality'>Learn More</url>",
   "tiltStep": "Tilt Step",
   "tiltingScheme": "Tilting Scheme",
   "tissueName": "Tissue Name",
@@ -431,11 +431,11 @@
   "unitDegree": "{{value}}°",
   "unitMillimeter": "{{value}} mm",
   "unitVolts": "{{value}} V",
-  "urlAPIQuickstart": "https://chanzuckerberg.github.io/cryoet-data-portal/cryoet_data_portal_docsite_quick_start.html",
+  "urlAPIQuickstart": "https://chanzuckerberg.github.io/cryoet-data-portal/stable/cryoet_data_portal_docsite_quick_start.html",
   "urlCZ": "https://chanzuckerberg.com/",
   "urlCZII": "https://www.czimaginginstitute.org/",
   "urlDataContributionForm": "https://airtable.com/apppmytRJXoXYTO9w/shr5UxgeQcUTSGyiY?prefill_Event=Portal&hide_Event=true",
-  "urlDepositionsDocumentation": "https://chanzuckerberg.github.io/cryoet-data-portal/cryoet_data_portal_docsite_data.html#depositions",
+  "urlDepositionsDocumentation": "https://chanzuckerberg.github.io/cryoet-data-portal/stable/cryoet_data_portal_docsite_data.html#depositions",
   "urlEMPIAR": "https://www.ebi.ac.uk/empiar/",
   "valueToValue": "{{value1}} to {{value2}}",
   "veryPoor": "Very Poor",