github actions for cargo tests

chanzuckerberg · Apr 8, 2024 · 2329bc3 · 2329bc3
1 parent 2e1c117
commit 2329bc3
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diff --git a/.github/workflows/index-generation-cargo-test.yml b/.github/workflows/index-generation-cargo-test.yml
@@ -0,0 +1,43 @@
+name: Index Generation NCBI Compress cargo tests
+
+on:
+  push:
+    paths:
+      - 'workflows/index-generation/ncbi-compress/*'
+
+env:
+  LC_ALL: C.UTF-8
+  LANG: C.UTF-8
+  DEBIAN_FRONTEND: noninteractive
+
+jobs:
+  cargo-test:
+    runs-on: ubuntu-22.04
+    steps:
+      - uses: actions/checkout@v2
+      - name: docker login ghcr.io
+        uses: docker/login-action@v1
+        with:
+            registry: ghcr.io
+            username: ${{ github.repository_owner }}
+            password: ${{ secrets.GITHUB_TOKEN }}
+      - name: docker build + push to ghcr.io
+        run: |
+          TAG=$(git describe --long --tags --always --dirty)
+          IMAGE_NAME=czid-index-generation-public
+          IMAGE_URI="ghcr.io/${GITHUB_REPOSITORY}/${IMAGE_NAME}"
+
+          CACHE_FROM=""; docker pull "$IMAGE_URI" && CACHE_FROM="--cache-from $IMAGE_URI"
+          ./scripts/docker-build.sh "workflows/index-generation" --tag "${IMAGE_URI}:${TAG}" $CACHE_FROM \
+            || ./scripts/docker-build.sh "workflows/index-generation" --tag "${IMAGE_URI}:${TAG}"
+          docker push "${IMAGE_URI}:${TAG}"
+          if [[ ${GITHUB_REF##*/} == "main" ]]; then
+            docker tag "${IMAGE_URI}:${TAG}" "${IMAGE_URI}:latest"
+            docker push "${IMAGE_URI}:latest"
+          fi
+
+          echo "IMAGE_URI=${IMAGE_URI}" >> $GITHUB_ENV
+          echo "TAG=${TAG}" >> $GITHUB_ENV
+      - name: run cargo tests
+        run: |
+          make cargo-test-index-generation
diff --git a/.github/workflows/wdl-ci.yml b/.github/workflows/wdl-ci.yml
@@ -107,34 +107,3 @@ jobs:
           export DOCKER_IMAGE_ID="${IMAGE_URI}:${TAG}"
 
           make test-${{ matrix.workflow_dir }}
-
-  cargo-test:
-    runs-on: ubuntu-22.04
-    steps:
-      - uses: actions/checkout@v2
-      - name: docker login ghcr.io
-        uses: docker/login-action@v1
-        with:
-            registry: ghcr.io
-            username: ${{ github.repository_owner }}
-            password: ${{ secrets.GITHUB_TOKEN }}
-      - name: docker build + push to ghcr.io
-        run: |
-          TAG=$(git describe --long --tags --always --dirty)
-          IMAGE_NAME=czid-index-generation-public
-          IMAGE_URI="ghcr.io/${GITHUB_REPOSITORY}/${IMAGE_NAME}"
-
-          CACHE_FROM=""; docker pull "$IMAGE_URI" && CACHE_FROM="--cache-from $IMAGE_URI"
-          ./scripts/docker-build.sh "workflows/index-generation" --tag "${IMAGE_URI}:${TAG}" $CACHE_FROM \
-            || ./scripts/docker-build.sh "workflows/index-generation" --tag "${IMAGE_URI}:${TAG}"
-          docker push "${IMAGE_URI}:${TAG}"
-          if [[ ${GITHUB_REF##*/} == "main" ]]; then
-            docker tag "${IMAGE_URI}:${TAG}" "${IMAGE_URI}:latest"
-            docker push "${IMAGE_URI}:latest"
-          fi
-
-          echo "IMAGE_URI=${IMAGE_URI}" >> $GITHUB_ENV
-          echo "TAG=${TAG}" >> $GITHUB_ENV
-      - name: run cargo tests
-        run: |
-          make cargo-test-index-generation