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zip outputs recursive #348

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merged 2 commits into from
Apr 17, 2024
Merged

zip outputs recursive #348

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a7394ff
zip outputs recursive
rzlim08 Apr 17, 2024
d7a045f
update manifest
rzlim08 Apr 17, 2024
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1 change: 1 addition & 0 deletions workflows/bulk-download/manifest.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,7 @@ input_loaders:
bulk_download_type: ~
outputs:
files: ~
concatenated_output_name: ~
- name: passthrough
version: ">=0.0.1"
inputs:
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2 changes: 1 addition & 1 deletion workflows/bulk-download/run.wdl
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Expand Up @@ -92,7 +92,7 @@ task zip {
mkdir zip_folders
for f in ~{sep=" " files}; do unzip "$f" -d zip_folders/$(basename "${f%.zip}"); done
cd zip_folders
zip ../result.zip *
zip -r ../result.zip *
else
zip --junk-paths result.zip ~{sep=" " files}
fi
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