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content/content/z_proj_tut1.md

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+title = "My notebook title"
+date = "2018-06-01"
+author = "firstname lastname"
+categories = ["category1", "category2"]
+tags = ["tag1", "tag2", "tag3"]
++++
+
+
+# Post title
+
+
+```python
+from skimage import data
+import matplotlib.pyplot as plt
+import numpy as np
+
+image = data.cells3d()
+
+```
+
+
+```python
+print (image.shape)
+```
+
+    (60, 2, 256, 256)
+
+
+
+```python
+plt.imshow(image[40,1,:,:])
+
+```
+
+
+
+
+    <matplotlib.image.AxesImage at 0x17ace13f0>
+
+
+
+
+
+![png](output_4_1.png)
+
+
+
+
+```python
+nucl_img_all = image[:,1,:,:]
+nucl_img_sel = image[25:40,1,:,:]
+print(nucl_img.shape)
+
+mean_nucl_img = np.mean(nucl_img, axis=0)
+mean_nucl_sel = np.mean(nucl_img_sel, axis= 0)
+```
+
+    (60, 256, 256)
+
+
+
+```python
+plt.imshow(mean_nucl_img)
+```
+
+
+
+
+    <matplotlib.image.AxesImage at 0x17a97b880>
+
+
+
+
+
+![png](output_6_1.png)
+
+
+
+
+```python
+plt.imshow(mean_nucl_sel)
+```
+
+
+
+
+    <matplotlib.image.AxesImage at 0x17de4bac0>
+
+
+
+
+
+![png](output_7_1.png)
+
+
+
+
+```python
+
+```