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ArthurDeclercq committed Feb 8, 2024
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Expand Up @@ -342,8 +342,8 @@ next to the predictions for singly charged b- and y-ions.
| CIDch2 | v20190107 | [NIST CID Human](https://chemdata.nist.gov/) (340 356) | [NIST CID Yeast](https://chemdata.nist.gov/) (92 609) | 0.904947 (+) and 0.813342 (++) |
| HCD2021 | v20210416 | [Combined dataset] (520 579) | [PXD008034](https://doi.org/10.1016/j.jprot.2017.12.006) (35 269) | 0.932361
| Immuno-HCD | v20210316 | [Combined dataset] (460 191) | [PXD005231 (HLA-I)](https://doi.org/10.1101/098780) (46 753) <br>[PXD020011 (HLA-II)](https://doi.org/10.3389/fimmu.2020.01981 ) (23 941) | 0.963736<br>0.942383
| timsTOF2023 | v20230912 | [Combined dataset] (234 973) | Combined eval set [PXD04654], [PXD046535], [PXD04654] (13 012) | 0.892540 (tryptic), 0.871258 (elastase), 0.899834 (class I), 0.635548 (class II)
| timsTOF2024 | v20240105 | [Combined dataset] (480 024) | Combined eval set [PXD04654], [PXD046535], [PXD04654], [PXD038782] (25 265) | 0.883270 (tryptic), 0.814374 (elastase), 0.887192 (class I), 0.847951 (class II)
| timsTOF2023 | v20230912 | [Combined dataset] (234 973) | Combined eval set: PXD043026, PXD046535, PXD046543 (13 012) | 0.892540 (tryptic)<br>0.871258 (elastase)<br>0.899834 (class I)<br>0.635548 (class II)
| timsTOF2024 | v20240105 | [Combined dataset] (480 024) | Combined eval set: PXD043026, PXD046535, PXD046543, PXD038782 (25 265) | 0.883270 (tryptic)<br>0.814374 (elastase)<br>0.887192 (class I)<br>0.847951 (class II)


To train custom MS²PIP models, please refer to [Training new MS²PIP models](http://compomics.github.io/projects/ms2pip_c/wiki/Training-new-MS2PIP-models.html) on our Wiki pages.

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