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fix: keep git-ignored files on update (#1373) #2637

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Job	Run time
flake-check (macos-latest)	11m 42s
build (macos-latest, 3.8)	5m 8s
flake-check (ubuntu-latest)	5m 32s
build (macos-latest, 3.9)	7m 28s
build (macos-latest, 3.10)	6m 12s
build (macos-latest, 3.11)	6m 11s
build (macos-latest, 3.12)	10m 27s
build (ubuntu-latest, 3.8)	4m 7s
build (ubuntu-latest, 3.9)	4m 5s
build (ubuntu-latest, 3.10)	3m 41s
build (ubuntu-latest, 3.11)	3m 33s
build (ubuntu-latest, 3.12)	11m 33s
build (windows-latest, 3.8)	7m 4s
build (windows-latest, 3.9)	7m 18s
build (windows-latest, 3.10)	7m 8s
build (windows-latest, 3.11)	13m 17s
build (windows-latest, 3.12)	7m 22s
publish	0s
	2h 1m 48s