iSnobal - CSU - Add slurm and first model day scripts

iSnobal/CSU/run_first_day.sh

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+#!/usr/bin/env bash
+#
+# Run for given day. Date format: 2017-10-01
+#
+
+module load mambaforge
+mamba activate isnoda
+
+INI_FILE_PREFIX="/projects/[email protected]/iSnobal-configs/CameronPass/CP_awsm"
+
+# Initial run, no previous days
+awsm_daily_airflow -c ${INI_FILE_PREFIX}_$(date -d "${1} + 1 year" +%Y).ini \
+  --no_previous \
+  --start_date $1

iSnobal/CSU/slurm-scripts/iSnobal.slurm

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+#!/bin/bash
+
+#SBATCH --job-name=iSnobal
+#SBATCH --account=csu-general
+#SBATCH --partition=csu
+
+#SBATCH --time=18:00:00
+#SBATCH --ntasks=32
+#SBATCH --mem=32G
+
+#SBATCH --mail-type=FAIL,END
+#SBATCH [email protected]
+
+#SBATCH --chdir=/scratch/alpine/c837508519\@colostate.edu/
+#SBATCH --output=slurm-%j.out-%N
+#SBATCH --error=slurm-%j.err-%N
+
+# Enable CPU Hyper-threading
+export OMP_NUM_THREADS=${SLURM_NTASKS}
+
+module load mambaforge
+mamba activate isnoda
+
+awsm_daily /projects/[email protected]/iSnobal-configs/CameronPass/CP_awsm_2021.ini
+

iSnobal/CSU/slurm-scripts/katana.slurm

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+#!/bin/bash
+
+#SBATCH --job-name=katana
+#SBATCH --account=csu-general
+#SBATCH --partition=csu
+
+#SBATCH --time=4:00:00
+#SBATCH --ntasks=24
+#SBATCH --mem=16G
+
+#SBATCH --mail-type=FAIL,END
+#SBATCH [email protected]
+
+#SBATCH --chdir=/scratch/alpine/c837508519\@colostate.edu/
+#SBATCH --output=slurm-%j.out-%N
+#SBATCH --error=slurm-%j.err-%N
+
+module load singularity/3.7.4
+
+export OMP_NUM_THREADS=${SLURM_NTASKS}
+
+START_YEAR=2020
+START_MONTH=10
+
+## Configuration section ##
+# Path to input, output, and config files
+BASIN_SETUP=/projects/[email protected]/iSnobal-configs/CameronPass
+INPUT_DIR=/pl/active/McGrath_Snow/HRRR
+KATANA_OUTPUT_DIR=/pl/active/McGrath_Snow/iSnobal/CP_katana
+
+KATANA_INI=${BASIN_SETUP}/CP_katana.ini
+KATANA_IMAGE=/projects/[email protected]/iSnobal/katana/katana.sif
+
+## -------------------------------------------- ##
+
+for MONTH in {0..11}; do
+  START=($(date -d "${START_MONTH}/01/${START_YEAR} + ${MONTH} month" "+%m %Y"))
+  END=($(date -d "${START_MONTH}/01/${START_YEAR} + $((MONTH + 1)) month" "+%m %Y"))
+
+  MONTH=${START[0]}
+  YEAR=${START[1]}
+  MONTH_END=${END[0]}
+  YEAR_END=${END[1]}
+
+  echo "Processing: ${YEAR}-${MONTH}"
+
+  # Make copy of ini to edit and have as backup
+  MONTH_INI="${KATANA_OUTPUT_DIR}/katana_${YEAR}${MONTH}.ini"
+  cp ${KATANA_INI} ${MONTH_INI}
+
+  # Update the config to the month processed
+  sed -i -e "s/^start_date: .* UTC/start_date: ${YEAR}-${MONTH}-01 00:00:00 UTC/g" ${MONTH_INI}
+  sed -i -e "s/^end_date: .* UTC/end_date: ${YEAR_END}-${MONTH_END}-01 00:00:00 UTC/g" ${MONTH_INI}
+
+  # Map container file path to local
+  export SINGULARITY_BIND="${BASIN_SETUP}:/data/topo,${INPUT_DIR}:/data/input,${KATANA_OUTPUT_DIR}:/data/output"
+  # Run
+  singularity exec ${KATANA_IMAGE} run_katana ${MONTH_INI} 1>&2
+
+  if [ $? -ne 0 ]; then
+    >&2 echo "ERROR processing ${YEAR}${MONTH}"
+    continue
+  fi
+done
+
+# Unused  katana output files by iSnobal
+find ${KATANA_OUTPUT_DIR} -name *.prj -type f -delete
+find ${KATANA_OUTPUT_DIR} -name *_cld.asc -type f -delete
+## Unused temporary grib files created by katana
+find ${KATANA_OUTPUT_DIR} -name *.grib2 -type f -delete
+find ${KATANA_OUTPUT_DIR} -name hrrr.* -type d -empty -delete
+