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alternate alignments
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tobiasrausch committed Oct 9, 2024
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Expand Up @@ -133,7 +133,7 @@ Delly also supports long-reads for SV discovery.
Alternate alignments for genome graphs
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Instead of providing only one input alignment, delly supports now multiple alternate alignments on different linear reference genomes using minimap2 or pan-genome graphs using minigraph.
Instead of providing only one input alignment, delly supports now multiple alternate alignments on different linear reference genomes using [minimap2](https://github.com/lh3/minimap2) or pan-genome graphs using [minigraph](https://github.com/lh3/minigraph).

```
minimap2 -ax map-pb -L chm13.fa sample.fq.gz
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