Bugfix, make it easier to generate knockdown simulations involving mu… #33

	# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
	# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
	on:
	push:
	branches: [main, master]
	release:
	types: [published]
	workflow_dispatch:

	name: pkgdown

	jobs:
	pkgdown:
	runs-on: ubuntu-latest
	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
	steps:
	- uses: actions/checkout@v2

	- uses: r-lib/actions/setup-pandoc@v1

	- uses: r-lib/actions/setup-r@v1
	with:
	use-public-rspm: true

	- uses: r-lib/actions/setup-r-dependencies@v1
	with:
	extra-packages: \|
	pkgdown
	remotes
	tidyverse
	needs: website

	- name: Install more dependencies
	run: \|
	remotes::install_deps(dependencies = TRUE)
	remotes::install_github('dynverse/dyno')
	remotes::install_bioc('countsimQC')
	shell: Rscript {0}

	- name: Deploy package
	run: \|
	git config --local user.name "$GITHUB_ACTOR"
	git config --local user.email "[email protected]"
	Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)'

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