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Creating dockerfile for targets #12

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merged 1 commit into from
Dec 20, 2023
Merged

Creating dockerfile for targets #12

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5 changes: 3 additions & 2 deletions .github/workflows/docker.yaml → .github/workflows/docker_targets.yaml
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@@ -1,4 +1,4 @@
name: build docker container
name: build targets docker container

on:
workflow_dispatch:
Expand All @@ -24,5 +24,6 @@ jobs:
uses: docker/build-push-action@v3
with:
push: true
tags: eco4cast/rocker-neon4cast:latest
tags: eco4cast/usgsrc4cast-targets:latest
build-args: GITHUB_PAT=${{ secrets.PAT }}
file: targets/Dockerfile
3 changes: 1 addition & 2 deletions .github/workflows/targets.yaml
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Expand Up @@ -16,14 +16,13 @@ jobs:
AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY_SUBMISSIONS }}
OSN_KEY: ${{ secrets.OSN_KEY }}
OSN_SECRET: ${{ secrets.OSN_SECRET }}
container: rocker/geospatial:latest
container: eco4cast/usgsrc4cast-targets:latest
steps:
- uses: actions/checkout@v3

- name: Generate targets
shell: Rscript {0}
run: |
install.packages(c("clustermq", "dataRetrieval", "RCurl", "tarchetypes", "targets"))
setwd("targets")
targets::tar_make()

33 changes: 0 additions & 33 deletions Dockerfile
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This file was deleted.

21 changes: 21 additions & 0 deletions targets/Dockerfile
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@@ -0,0 +1,21 @@
FROM eco4cast/rocker-neon4cast:latest

# Import GitHub Secret
ARG GITHUB_PAT
ENV GITHUB_PAT=$GITHUB_PAT

# Declares build arguments
# ARG NB_USER
# ARG NB_UID

# COPY --chown=${NB_USER} . ${HOME}

#USER ${NB_USER}
RUN install2.r --error \
clustermq \
dataRetrieval \
tarchetypes \
targets \
&& rm -rf /tmp/downloaded_packages /tmp/*.rds /tmp/Rtmp*

COPY cron.sh /etc/services.d/cron/run