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DOC: words are hard
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fedarko committed Dec 29, 2024
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Expand Up @@ -215,11 +215,10 @@ for computing dot plots, were based on Chapter 6 of
(Compeau & Pevzner).

The idea of using suffix arrays to speed up dot plot computation is not new; it
is also implemented in
[Gepard](https://cube.univie.ac.at/gepard)
is also used in [Gepard](https://cube.univie.ac.at/gepard)
([Krumsiek _et al._ 2007](https://academic.oup.com/bioinformatics/article/23/8/1026/198110)).
(Eventually I moved from directly using suffix arrays to just using the
`pydivsufsort.common_substrings()` algorithm, at least as the default. Although
`pydivsufsort.common_substrings()` algorithm, at least as the default algorithm; although
that is still [using a suffix array under the hood](https://github.com/louisabraham/pydivsufsort/blob/2869020c26022e0f88592e85cdc480856e9856d5/pydivsufsort/wonderstring.py#L128-L157) :)

### Dependencies
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