Add file-level descriptions in output.md (genomic-medicine-sweden#226)

* Update output.md * prettier and CHANGELOG * prettier * Add toc * typo * fix link * Update CHANGELOG.md * prettier
fellen31 · Jun 26, 2024 · b329cee · b329cee
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -12,6 +12,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [#159](https://github.com/genomic-medicine-sweden/nallo/pull/159) - Added the ability to use multiple input files per sample, by splitting and aligning each input file individually, then merging them post-alignment for streamlined processing
 - [#162](https://github.com/genomic-medicine-sweden/nallo/pull/162) - Added paraphase, a "HiFi-based caller for highly similar paralogous genes"
 - [#179](https://github.com/genomic-medicine-sweden/nallo/pull/179) - Added support for running without `--fasta`, when running subworklows that do not require a reference genome
+- [#226](https://github.com/genomic-medicine-sweden/nallo/pull/226) - Added file-level output documentation
 
 ### `Changed`