Code

Data structure for filters#2168

Code

Merged

tcompa merged 107 commits intodev-2.11fractal-analytics-platform/fractal-server:dev-2.11from 2153-data-structure-for-filtersfractal-analytics-platform/fractal-server:2153-data-structure-for-filtersCopy head branch name to clipboardJan 15, 2025

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Commits

Commits on Jan 7, 2025

• rename validator

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• add accept_none=True to valdict_scalarvalues

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• change dataset model and add migration

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• rename variable

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• modify validator

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• update dataset schemas

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• fix type hint

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• remaining dataset schemas

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• split filters in workflow task model

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• split filters in workflowtask schemas

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• remove default factory from dataset read

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• attribute_filters in jobv2

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• attribute_filters in jobv2 schemas

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• fix test_schemas_dataset_v2

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• fix test_workflow_task_dump

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• remove old columns

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Commits on Jan 8, 2025

• new filters validators

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• fix test api dataset

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• remove input_filters

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• remove Filters schema

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• remove Filters

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• remove Filters from runner

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• reintroduce old columns

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• validators to ImageQuery

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• fix migration

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• revamp validators

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• homogeneus types in list

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• remove check from match filter

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• remove valdict_scalarvalues

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Commits on Jan 9, 2025

• Merge branch 'main' into 2153-data-structure-for-filters

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• task output validator

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• Update task_interface.py

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• Update runner with new filter logic

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• add validator to task output type filters

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• Introduce AttributeFiltersType and accept None as a value for attribute filters

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• Extend usage of AttributeFiltersType

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• Extend usage of AttributeFiltersType

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• Adapt test_filter_image_list_with_filters

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• Add FIXME

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• Update validate_attribute_filters (accepting values=None)

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• Add test_attribute_filters_set_to_none

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• Add job_attribute_filters to all runner backends

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• Fix version migration script

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• Fix version migration script

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• test image models

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• test unit image tools

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• fix test benchmark

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Commits on Jan 13, 2025

• fix query image endpoint

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• fix test_api_dataset_images

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• fix dataset dump

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• exclude none from DatasetUpdate

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• test update dataset filters

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Commits on Jan 14, 2025

• fix test_filters

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• fail with None filters

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• run ci for pr to dev-2.11

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• fix test_patch_dataset

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• fix test_schemas_dataset_v2

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• Merge branch 'dev-2.11' into 2153-data-structure-for-filters

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• Fix use of match_filters in runner - cc @ychiucco

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• Update tests 04

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• migration script

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• do not subscript wft

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• Fix tests 08

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• Merge branch '2153-data-structure-for-filters' of github.com:fractal-analytics-platform/fractal-server into 2153-data-structure-for-filters

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• FIXME

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• do not use extra field in dump

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• Merge remote-tracking branch 'refs/remotes/origin/2153-data-structure-for-filters' into 2153-data-structure-for-filters

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• Fix test 09

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• Merge branch '2153-data-structure-for-filters' of github.com:fractal-analytics-platform/fractal-server into 2153-data-structure-for-filters

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• pop datasetdump.filters

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• Review use of filters in merge_outputs

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• Remove obsolete file

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• server default to None

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• Merge remote-tracking branch 'refs/remotes/origin/2153-data-structure-for-filters' into 2153-data-structure-for-filters

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• Merge remote-tracking branch 'refs/remotes/origin/2153-data-structure-for-filters' into 2153-data-structure-for-filters

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• default_server="null"

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• default_server="null" in models

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• move definitions outside list comprehension

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• match_filter accept only kwargs

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• set level info

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• use info logging

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• Improve match_filter

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• docstring and warning message

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• Merge remote-tracking branch 'refs/remotes/origin/2153-data-structure-for-filters' into 2153-data-structure-for-filters

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• use kwargs in match_filter

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• changes from comments

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• create module _filter_validators.py

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• comment and docstring

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• comment

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Commits on Jan 15, 2025

• Add some validation tests

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• Extend some validation tests

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• remove outdated comment

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• unit test merge_outputs

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• refactor merge_outputs

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• improve unit test

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• test update_legacy_filters

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• simplify check

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• deduplicate image_list_removals

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• assert correct order

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• Comment [skip ci]

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• Add case to unit test

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• Only use job_attribute_filters in runner - ref #2155

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• Extend unit test

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• Rename schema

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• remove default from image_ok and image_fail

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• look fok unexisting image

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• CHANGELOG [skip ci]

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