File format toolkit

fasta_feature_for_gbk

Given a fasta file and a feature table, it can output a simplified version of the genbank file.

Prerequisite:

EMBOSS seqret http://www.bioinformatics.nl/cgi-bin/emboss/help/seqret

Input files:

• 1. Only one-sequence fasta file
• 2. a feature table, tab seperated txt file

Command:

parameter1: input fasta file parameter2: feature file parameter3: output the gbk file

fa_feature_to_gbk.sh MT.fasta feature.txt MT.feature.gbk

Output file

The output file is the simplified gbk file, with our defined features.