Build DEBs

.github/workflows/build-release.yml

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+name: Build binaries and DEB packages
+
+on:
+  push:
+    branches: [ main ]
+  pull_request:
+    branches: [ main ]
+
+jobs:
+  build-debs:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        include:
+          - name: amd64
+            arch: amd64
+            platform: linux/amd64
+          - name: arm64
+            arch: arm64
+            platform: linux/arm64
+          # SDSL requires a 64 bit system.  32 bit system detected.
+          # - name: arm32
+          #   arch: arm32
+          #   platform: linux/arm/v7
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+        with:
+          submodules: 'recursive'
+
+      - name: Set up QEMU
+        uses: docker/setup-qemu-action@v2
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v2
+
+      - name: Build
+        uses: docker/build-push-action@v4
+        with:
+          context: .
+          file: ./Dockerfile.staticbuild
+          platforms: ${{ matrix.platform }}
+          load: true
+          push: false
+          tags: tracy:local
+
+      - name: Get the version
+        id: get_version
+        run: |
+          echo "version=$(cat src/version.h | grep -Po '(?<=tracyVersionNumber = ")[^\"]+')" >> $GITHUB_OUTPUT
+          echo "status=success" >> $GITHUB_OUTPUT
+
+      - name: Extract binary from container
+        id: extract
+        run: |
+          docker create --name extract --platform ${{ matrix.platform }} tracy:local
+          docker cp extract:/opt/tracy/bin/tracy ./tracy-${{ matrix.arch }}-${{ steps.get_version.outputs.version }}
+          docker rm -v extract
+          echo "filename=tracy-${{ matrix.arch }}-${{ steps.get_version.outputs.version }}" >> $GITHUB_OUTPUT
+          echo "status=success" >> $GITHUB_OUTPUT
+
+      - name: Prepare DPKG files
+        run: |
+          mkdir -p .debpkg/usr/bin
+          cp ./${{ steps.extract.outputs.filename }} .debpkg/usr/bin/tracy
+          chmod +x .debpkg/usr/bin/tracy
+
+      - uses: jiro4989/build-deb-action@v2
+        id: build-deb
+        with:
+          package: tracy
+          package_root: .debpkg
+          maintainer: Tobias Rausch <[email protected]>
+          version: ${{ steps.get_version.outputs.version }}
+          arch: ${{ matrix.arch }}
+          depends: 'libc6 (>= 2.2.1)'
+          desc: 'Tracy: basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files'
+
+      - name: Upload a Build Artifact
+        uses: actions/upload-artifact@v3
+        if: steps.extract.outputs.status == 'success' && !cancelled()
+        with:
+          # Artifact name
+          name: tracy-${{ matrix.arch }}
+          # A file, directory or wildcard pattern that describes what to upload
+          path: |
+            ./${{ steps.extract.outputs.filename }}
+            ./*.deb
+          if-no-files-found: error
+  make-release:
+    needs: build-debs
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+
+      - name: Get the version
+        id: get_version
+        run: |
+          echo "version=$(cat src/version.h | grep -Po '(?<=tracyVersionNumber = ")[^\"]+')" >> $GITHUB_OUTPUT
+          echo "status=success" >> $GITHUB_OUTPUT
+
+      - name: Download all assets
+        uses: actions/download-artifact@v3
+        with:
+          path: artifacts
+
+      - name: Generate release tag
+        id: tag
+        if: github.ref == 'refs/heads/main' && !cancelled()
+        run: |
+          echo "release_tag=$(echo ${GITHUB_SHA::4})" >> $GITHUB_OUTPUT
+          echo "status=success" >> $GITHUB_OUTPUT
+
+      - name: Create release
+        uses: softprops/action-gh-release@v1
+#          if: startsWith(github.ref, 'refs/tags/')
+        with:
+          files: |
+            artifacts/tracy-*/*
+          prerelease: true
+          tag_name: ${{ steps.get_version.outputs.version }}-${{ steps.tag.outputs.release_tag }}

Dockerfile.staticbuild

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+# use the ubuntu base image
+FROM ubuntu:22.04
+
+MAINTAINER Tobias Rausch [email protected]
+
+# install packages
+RUN apt-get update && apt-get install -y \
+    autoconf \
+    build-essential \
+    cmake \
+    g++ \
+    gfortran \
+    git \
+    libcurl4-gnutls-dev \
+    hdf5-tools \
+    libboost-date-time-dev \
+    libboost-program-options-dev \
+    libboost-system-dev \
+    libboost-filesystem-dev \
+    libboost-iostreams-dev \
+    libbz2-dev \
+    libdeflate-dev \
+    libhdf5-dev \
+    libncurses-dev \
+    liblzma-dev \
+    zlib1g-dev \
+    && apt-get clean \
+    && rm -rf /var/lib/apt/lists/*
+
+# set environment
+ENV BOOST_ROOT /usr
+
+# install tracy
+WORKDIR /opt/tracy/
+ADD ./src/ /opt/tracy/src/
+COPY .gitmodules Makefile /opt/tracy/
+RUN make STATIC=1 all \
+    && make install
+
+# by default /bin/sh is executed
+CMD ["/bin/sh"]