Add copy_to_cron to configs

genomic-medicine-sweden · Nov 9, 2023 · 10b4ac3 · 10b4ac3
1 parent 2e5d2ea
commit 10b4ac3
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Showing 3 changed files with 9 additions and 0 deletions.
diff --git a/configs/nextflow.base.config b/configs/nextflow.base.config
@@ -117,6 +117,9 @@ process {
 	withName: chewbbaca_split_results {
 		publishDir = [ path: "${params.outdir}/${params.speciesDir}/chewbbaca", mode: 'copy', overwrite: true ]
 	}
+	withName: copy_to_cron {
+		publishDir = [ path: "${params.outdir}/${params.speciesDir}/cron", mode: 'copy', overwrite: true ]
+	}
 	withName: create_analysis_result {
 		container = "${params.containerDir}/pythonScripts.sif"
 		publishDir = [ path: "${params.outdir}/${params.speciesDir}/analysis_result", mode: 'copy', overwrite: true ]

diff --git a/configs/nextflow.ngp.config b/configs/nextflow.ngp.config
@@ -122,6 +122,9 @@ process {
 	withName: chewbbaca_split_results {
 		publishDir = [ path: "${params.outdir}/${params.speciesDir}/chewbbaca", mode: 'copy', overwrite: true ]
 	}
+	withName: copy_to_cron {
+		publishDir = [ path: "${params.outdir}/${params.speciesDir}/cron", mode: 'copy', overwrite: true ]
+	}
 	withName: create_analysis_result {
 		container = "${params.containerDir}/pythonScripts.sif"
 		publishDir = [ path: "${params.outdir}/${params.speciesDir}/analysis_result", mode: 'copy', overwrite: true ]

diff --git a/configs/nextflow.selftest.config b/configs/nextflow.selftest.config
@@ -121,6 +121,9 @@ process {
 	withName: chewbbaca_split_results {
 		publishDir = [ path: "${params.outdir}/${params.speciesDir}/chewbbaca", mode: 'copy', overwrite: true ]
 	}
+	withName: copy_to_cron {
+		publishDir = [ path: "${params.outdir}/${params.speciesDir}/cron", mode: 'copy', overwrite: true ]
+	}
 	withName: create_analysis_result {
 		container = "${params.containerDir}/pythonScripts.sif"
 		publishDir = [ path: "${params.outdir}/${params.speciesDir}/analysis_result", mode: 'copy', overwrite: true ]