Merge pull request #233 from genomic-medicine-sweden/add-ecoli-wgmlst…

…-bed Add ecoli wgmlst bed
genomic-medicine-sweden · Dec 6, 2023 · 428788e · 428788e
2 parents d1c7c5e + e60c226
commit 428788e
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diff --git a/.gitignore b/.gitignore
@@ -9,7 +9,7 @@ assets/genomes
 assets/mlst_db/blast
 assets/mlst_db/pubmlst
 assets/amrfinder_db
-assets/wgmlst
+assets/wgmlst/*/alleles*
 assets/prodigal_training_files/*
 assets/krakenstd
 work/

diff --git a/README.md b/README.md
@@ -24,7 +24,7 @@ JASEN has been developed for a small set of microbiota (primarily MRSA), but wil
 ### Copy code locally
 
 ```
-git clone --recurse-submodules --single-branch --branch master  https://github.com/genomic-medicine-sweden/JASEN.git && cd JASEN
+git clone --recurse-submodules --single-branch --branch master  git@github.com:genomic-medicine-sweden/JASEN.git && cd JASEN
 ```
 
 ### Access to OCI registries (Optional)