Merge pull request #222 from genomic-medicine-sweden/221-fix-resfinde…

…r-version

Fix #221: Make sure that the correct version of ResFinder is pulled, and update to 4.4.1

container/resfinder

@@ -5,14 +5,14 @@ From:python:3.8
 %labels
         MAINTAINER Isak Sylvin <[email protected]>
         DESCRIPTION Singularity container for CMD microbiology WGS pipeline
-        VERSION 4.1.11
+        VERSION 4.4.1
 
 %environment
         export PATH="/tmp/bestfolder/resfinder/run_resfinder.py:$PATH"
         umask 0002
 
 %post
-     RESFINDER_VERSION=4.1.11
+     RESFINDER_VERSION=4.4.1
      KMA_VERSION=1.3.27
      BLAST_VERSION=2.9.0
 
@@ -30,7 +30,7 @@ From:python:3.8
          chmod -R 0777 /tmp/bestfolder
 
          pip3 install tabulate biopython cgecore gitpython python-dateutil
-         pip3 install resfinder
+         pip3 install resfinder==${RESFINDER_VERSION}
 
 
          git clone -b "${KMA_VERSION}" https://bitbucket.org/genomicepidemiology/kma.git resfinder/cge/kma && \