Fix #238: Rename imports from get_seqrun to get_seqrun_meta

genomic-medicine-sweden · Dec 14, 2023 · 81b191d · 81b191d
1 parent c264ab2
commit 81b191d
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Showing 4 changed files with 4 additions and 4 deletions.
diff --git a/workflows/escherichia_coli.nf b/workflows/escherichia_coli.nf
@@ -3,7 +3,7 @@
 nextflow.enable.dsl=2
 
 include { get_meta                                  } from '../methods/get_meta'
-include { get_seqrun                                } from '../methods/get_seqrun'
+include { get_seqrun_meta                           } from '../methods/get_seqrun_meta'
 include { amrfinderplus                             } from '../nextflow-modules/modules/amrfinderplus/main'
 include { bracken                                   } from '../nextflow-modules/modules/bracken/main'
 include { bwa_index                                 } from '../nextflow-modules/modules/bwa/main'

diff --git a/workflows/klebsiella_pneumoniae.nf b/workflows/klebsiella_pneumoniae.nf
@@ -3,7 +3,7 @@
 nextflow.enable.dsl=2
 
 include { get_meta                                  } from '../methods/get_meta'
-include { get_seqrun                                } from '../methods/get_seqrun'
+include { get_seqrun_meta                           } from '../methods/get_seqrun_meta'
 include { amrfinderplus                             } from '../nextflow-modules/modules/amrfinderplus/main'
 include { bracken                                   } from '../nextflow-modules/modules/bracken/main'
 include { bwa_index                                 } from '../nextflow-modules/modules/bwa/main'

diff --git a/workflows/mycobacterium_tuberculosis.nf b/workflows/mycobacterium_tuberculosis.nf
@@ -3,7 +3,7 @@
 nextflow.enable.dsl=2
 
 include { get_meta                  } from '../methods/get_meta'
-include { get_seqrun                } from '../methods/get_seqrun'
+include { get_seqrun_meta           } from '../methods/get_seqrun_meta'
 include { bracken                   } from '../nextflow-modules/modules/bracken/main'
 include { copy_to_cron              } from '../nextflow-modules/modules/cron/main'
 include { create_analysis_result    } from '../nextflow-modules/modules/prp/main'

diff --git a/workflows/staphylococcus_aureus.nf b/workflows/staphylococcus_aureus.nf
@@ -3,7 +3,7 @@
 nextflow.enable.dsl=2
 
 include { get_meta                                  } from '../methods/get_meta'
-include { get_seqrun                                } from '../methods/get_seqrun'
+include { get_seqrun_meta                           } from '../methods/get_seqrun_meta'
 include { amrfinderplus                             } from '../nextflow-modules/modules/amrfinderplus/main'
 include { bracken                                   } from '../nextflow-modules/modules/bracken/main'
 include { bwa_index                                 } from '../nextflow-modules/modules/bwa/main'