Set root config to github workspace env var

genomic-medicine-sweden · Jan 25, 2024 · b574af1 · b574af1
1 parent 5add1cf
commit b574af1
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/configs/nextflow.ci.config b/configs/nextflow.ci.config
@@ -1,5 +1,5 @@
 params {
-	root = "/home/xsylis/code/2306/JASEN" //edit
+	root = env.GITHUB_WORKSPACE //edit
 	amrfinderDb = "${root}/assets/amrfinder_db/latest"
 	resfinderDb = "${root}/assets/resfinder_db"
 	pointfinderDb = "${root}/assets/pointfinder_db"