Installation procedure improvements

[sylvinite]

Description

Changes written as part of the NGP integration.

• interrupted installation now hard resets E.Coli. to avoid fragmented installation
• Installation target file for streptococcus changed, to resolve interrupted installation
• Included htslib image to natively support tabix and bgzip
• Fixed a bug that prevented pipeline from correctly guessing misspelled profiles
• Removed sudo requirement from apptainer container creation (only required for older versions of apptainer) to streamline installation
• Light installation doc updates
• Updated NGP config file

Primary function of PR

• Hotfix
• Minor functionality improvement
• Major functionality improvement / New type of analysis
• Backward-breaking functionality

Testing

Either describe a procedure, or add data; that confirms that the PR resolves what it sets out to do

Sign-offs

• Code reviewed by @genomic-medicine-sweden/jasen-devs
• Code tested by @genomic-medicine-sweden/jasen-devs

[ryanjameskennedy]

Update the CHANGELOG please:)

[ryanjameskennedy]

Could you also sort out this issue while you're at it please. Both container/Makefile and the main Makefile will need to be edited.