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bump deepvariant version
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fellen31 committed Jan 17, 2025
1 parent 644b351 commit 1702ec9
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8 changes: 5 additions & 3 deletions CHANGELOG.md
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Expand Up @@ -13,6 +13,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
### `Changed`

- [#532](https://github.com/genomic-medicine-sweden/nallo/pull/532) - Updated template to nf-core/tools version 3.1.1
- [#535](https://github.com/genomic-medicine-sweden/nallo/pull/535) - Updated DeepVariant to 1.8.0 for SPRQ compatability

### `Removed`

Expand All @@ -31,9 +32,10 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
### Module updates

| Tool | Old version | New version |
| ------- | ----------- | ----------- |
| hifiasm | 0.19.8 | 0.24.0 |
| Tool | Old version | New version |
| ----------- | ----------- | ----------- |
| hifiasm | 0.19.8 | 0.24.0 |
| deepvariant | 1.6.1 | 1.8.0 |

> [!NOTE]
> Version has been updated if both old and new version information is present.
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4 changes: 2 additions & 2 deletions modules.json
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Expand Up @@ -79,12 +79,12 @@
},
"deepvariant/rundeepvariant": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"git_sha": "e9b59c82daa0fac067284fc52f93011b43952a8f",
"installed_by": ["modules"]
},
"deepvariant/vcfstatsreport": {
"branch": "master",
"git_sha": "2f9a5431355897e299cb41928c45f51ea8410c42",
"git_sha": "e9b59c82daa0fac067284fc52f93011b43952a8f",
"installed_by": ["modules"]
},
"ensemblvep/filtervep": {
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22 changes: 8 additions & 14 deletions modules/nf-core/deepvariant/rundeepvariant/main.nf

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