Merge pull request #1260 from glotzerlab/pybind11-fix-ci

Fix broken CI jobs on pybind11 branch.

.github/workflows/build_wheels.yml

@@ -96,8 +96,8 @@ jobs:
           CIBW_ARCHS: auto64
 
           # Configure environment variables.
-          CIBW_ENVIRONMENT_LINUX: "CMAKE_PREFIX_PATH=/project/tbb LD_LIBRARY_PATH=/project/tbb/lib/intel64/gcc4.8:$LD_LIBRARY_PATH"
-          CIBW_ENVIRONMENT_MACOS: "CMAKE_PREFIX_PATH=/Users/runner/work/freud/freud/tbb:/Users/runner/work/tbb-install LD_LIBRARY_PATH=/Users/runner/work/freud/freud/tbb/lib/intel64/gcc4.8:$LD_LIBRARY_PATH"
+          CIBW_ENVIRONMENT_LINUX: "CMAKE_PREFIX_PATH=/project/tbb LD_LIBRARY_PATH=/project/tbb/lib/intel64/gcc4.8:$LD_LIBRARY_PATH CMAKE_ARGS=-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=True"
+          CIBW_ENVIRONMENT_MACOS: "CMAKE_PREFIX_PATH=/Users/runner/work/freud/freud/tbb:/Users/runner/work/tbb-install CMAKE_ARGS=-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=True"
           MACOSX_DEPLOYMENT_TARGET: "10.14"
 
           # Set up TBB.
@@ -113,7 +113,9 @@ jobs:
             scipy==${{ matrix.python.oldest_scipy }}
             gsd==${{ matrix.python.oldest_gsd }}
             matplotlib==${{ matrix.python.oldest_matplotlib }}
-          CIBW_TEST_COMMAND: "cd {package}/tests && pytest . -v --log-level=DEBUG"
+          # Test only the currently ported modules
+          CIBW_TEST_COMMAND: "cd {package}/tests && pytest test_box_Box.py test_parallel.py -v --log-level=DEBUG"
+          # CIBW_TEST_COMMAND: "cd {package}/tests && pytest . -v --log-level=DEBUG"
 
       - uses: actions/[email protected]
         with:

.github/workflows/env-files/environment.yaml

@@ -4,6 +4,8 @@ channels:
 
 dependencies:
   - python==3.12
+  # TODO: Update to a newer cppcheck and adjust all C++ code to meet the new style guidlines
+  - cppcheck<2.0.0  # [linux64]
   - tbb
   - tbb-devel
   - ninja
@@ -12,8 +14,10 @@ dependencies:
   - dynasor
   - gsd
   - matplotlib
+  - nanobind>=2.0
   - numpy
   - pillow
+  - pre-commit
   - pytest
   - rowan
   - scikit-build