prep

gpertea · Aug 25, 2020 · 090cba2 · 090cba2
1 parent 0fa3650
commit 090cba2
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/Makefile b/Makefile
@@ -22,9 +22,9 @@ ifneq (,$(filter %release %static, $(MAKECMDGOALS)))
   ifneq (,$(findstring static,$(MAKECMDGOALS)))
     LDFLAGS += -static-libstdc++ -static-libgcc
   endif
-  CXXFLAGS := -O3 -DNDEBUG -std=c++0x $(CXXFLAGS)
+  CXXFLAGS := -O3 -DNDEBUG -std=c++11 $(CXXFLAGS)
 else # debug build
-  CXXFLAGS += -g -O0 -DDEBUG -D_DEBUG -DGDEBUG -std=c++0x
+  CXXFLAGS += -g -O0 -DDEBUG -D_DEBUG -DGDEBUG -std=c++11
   ifneq (,$(filter %memcheck %memdebug, $(MAKECMDGOALS)))
      #make memcheck : use the statically linked address sanitizer in gcc 4.9.x
      GCCVER49 := $(shell expr `${CXX} -dumpversion | cut -f1,2 -d.` \>= 4.9)

diff --git a/gffcompare.cpp b/gffcompare.cpp
@@ -3,7 +3,7 @@
 #include <errno.h>
 #include "gtf_tracking.h"
 
-#define VERSION "0.11.8"
+#define VERSION "0.12.1"
 
 #define USAGE "Usage:\n\
 gffcompare [-r <reference_mrna.gtf> [-R]] [-T] [-V] [-s <seq_path>]\n\

diff --git a/prep_source.sh b/prep_source.sh
@@ -13,7 +13,7 @@ libdir=$pack/gclib/
 cp LICENSE README.md gffcompare.cpp gtf_tracking.{h,cpp} \
  GIntervalTree.{h,cpp} trmap.cpp $pack/
 sed 's|\.\./gclib|./gclib|' Makefile > $pack/Makefile
-cp ../gclib/{GVec,GList,GHash}.hh $libdir
+cp ../gclib/{GVec,GList,GHashMap,khashl}.hh ../gclib/xxhash.h $libdir
 cp ../gclib/{GArgs,GBase,gdna,GStr,gff,codons,GFaSeqGet,GFastaIndex}.{h,cpp} $libdir
 tar cvfz $pack.tar.gz $pack
 ls -l $pack.tar.gz