Merge dev for 3.4.0 release #1076
Closed
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
* add python 3.11 * fix numba dep warning
* test pytest ini * add binary_heatmap, updates to tutorial notebook * test plotting * re-add pytest.ini * Update plot.py Fix a few bugs * add new tests * Update setup.cfg * remove binary_heatmap * mpl version req back to normal * remove binary_heatmap import * black * formatting fix --------- Co-authored-by: Benjamin Pedigo <[email protected]>
* attempted fix for matrix type erroring * fix spec of csr_array * add a random seed * remove isspmatrix * fix a type check * black
* more efficient graph matching matrix operations * fix formatting * remove an unused import (unrelated) * expose fast kwarg to user, docs * run black formatter * add typehint * fix mypy --------- Co-authored-by: bkj <[email protected]> Co-authored-by: bdpedigo <[email protected]>
* Add ax argument to screeplot (now returns None) * add a return value for screeplot() * Refactored for best practices
* specify angle as kwarg * try removing some maybe unnecessary code? * fight with mypy * black * fix sorts * try switch to explain * fix intersphinx * other instances of wrong tutorial intersphinx
* add release notes * bump version
….12+ (#1067) * use python poetry * add poethepoet to dev * refine some lib versions * update umap * update contributing docs * update seaborn * update balck, sphinx, pandoc * run formatter * apt install pandoc in docs job * update sk-learn * update statsmodels * remove 3.8 from build * update mypi * dynamic versioning plugin * restore original python range * update py range * affinity=>metric in agglomorativeclustering * formatting
* replace black, isort, pylint with ruff * update workflow to use `static_checks` task * enable some rules * enable 'tch' rules * revert pipeline/embed/__init__.py export order --------- Co-authored-by: Ben Pedigo <[email protected]>
#1021 please look at the file and let me know if I should make any changes Co-authored-by: Benjamin Pedigo <[email protected]>
* add fetch-depth, fetch-tags options * remove hash from dynamic version
updated-dependencies: - dependency-name: requests dependency-type: indirect ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* break up docsite/publish actions * remove matrix from docsite pub * clean up comments * use upload/download artifacts v4 * use distinct name in archive_dependency_tree * run fresh poetry.lock * update matplotlib import
* coalesce publish/docsite jobs * restore branch controls * remove pull_request trigger on publish
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Reference Issues/PRs
What does this implement/fix? Briefly explain your changes.
Any other comments?