Merge branch 'devel'

DESCRIPTION

@@ -8,7 +8,7 @@ Description: Facilitates easy manipulation of variant call format (VCF) data.
     data may be written to a VCF file (*.vcf.gz). It also may be converted into
     other popular R objects (e.g., genlight, DNAbin). VcfR provides a link between
     VCF data and familiar R software.
-Version: 1.11.0
+Version: 1.12.0
 Authors@R: c(
     person(c("Brian", "J."), "Knaus", role = c("cre", "aut"),
     email = "[email protected]", comment = c(ORCID = "0000-0003-1665-4343")),

NEWS.md

@@ -10,6 +10,10 @@ I think I encountered a situation where 4-96 was not enough so I've bumped it to
 This may have been addressed at 64a308ba50b9119108e8946737460de5997b805b by adding `samples` to vcfR method `[`.
 * In issue #92 (vcfR2genlight big data #92), JimWhiting91 has documented that `extract.gt()` could be greatly improved with multithreading. While he used `mclapply()` I do not feel this is the best solution because it does not work on Windows. I think a better solution would be [RCppParallel](https://rcppcore.github.io/RcppParallel/) because this should work on all CRAN platforms.
 
+# vcfR 1.12.0
+Released on CRAN 2020-XX-XX
+* Incorporated help from https://stackoverflow.com/a/62721142 to use checkbashisms when checking on Debian flavors of Linux
+
 # vcfR 1.11.0
 Released on CRAN 2020-06-05
 * Now compatible with R 4.0.0 and dplyr 1.0.0

configure

@@ -1,6 +1,15 @@
 #!/bin/sh
 
+# Thank you to the community for help!
 #
-checkbashisms --force
+# How to install checkbashisms.
+# https://github.com/simonwhitaker/linter-checkbashisms
+#
+# What to include in configure.
+# https://stackoverflow.com/a/62721142
+
+if [ -f /usr/bin/checkbashisms ]; then
+    checkbashisms --force
+fi
 
 # EOF.