MapTableToParameters: document metadata stowing. #876

Workflow file for this run

	# This is a definition file for GitHub CI.

	name: GitHub CI

	on:
	push:
	branches: [ master ]
	workflow_dispatch:

	jobs:
	static_checks_debian_stable_x86_64:
	runs-on: ubuntu-latest
	container:
	image: debian:stable
	timeout-minutes: 60
	steps:
	- uses: actions/checkout@v1
	- name: prep
	run: \|
	cp -R . /dcma
	- name: install_dependencies
	run: \|
	export DEBIAN_FRONTEND="noninteractive"
	apt-get update --yes
	apt-get install --yes --no-install-recommends coreutils binutils findutils grep sed
	- name: check_for_common_nonthreadsafe_nonreentrant_functions
	run: \|
	./scripts/perform_static_checks.sh

	build_cross_mxe_x86_64:
	runs-on: ubuntu-latest
	container:
	image: "hdclark/dcma_build_base_mxe:latest"
	timeout-minutes: 120
	steps:
	- uses: actions/checkout@v1
	- name: prep
	run: \|
	cp -R ./docker/builders/mxe /scratch
	cp -R . /dcma
	./scripts/enable_swapfile.sh
	- name: build
	run: \|
	( ( while true ; do sleep 225 ; printf '\n\n' ; df -h ; printf '\n\n' ; free \|\| true ; printf '\n\n' ; done ) &)
	./docker/builders/mxe/implementation_mxe.sh
	rsync -avP /out/ ./Windows/
	strip ./Windows/usr/bin/*exe
	strip ./Windows/usr/lib/*a
	( cd ./Windows/usr/bin/ && mv opengl32.dll opengl32_disabled.dll ) \|\| true
	git config --global --add safe.directory '*' \|\| true
	- name: test
	run: \|
	export DEBIAN_FRONTEND='noninteractive'
	sed -i -e 's@stable@bullseye@g' /etc/apt/sources.list
	apt-get update --yes
	apt-get install --yes --no-install-recommends git ca-certificates rsync mesa-utils
	dpkg --add-architecture i386
	apt-get update --yes
	apt-get install --yes wine32 wine64
	mkdir -pv wine-conf-dir
	chown "$(id -u)":"$(id -g)" wine-conf-dir
	export WINEPREFIX="$(pwd)/wine-conf-dir/.wine-prefix"
	find ./Windows/usr/bin/ -type f -exec chmod 777 '{}' \;
	rsync -a ./Windows/ /opt/
	echo '#!/bin/bash' > /usr/bin/dicomautomaton_dispatcher
	echo 'exec wine /opt/usr/bin/dicomautomaton_dispatcher.exe "$@"' >> /usr/bin/dicomautomaton_dispatcher
	chmod 777 /usr/bin/dicomautomaton_dispatcher
	dicomautomaton_dispatcher -h
	./integration_tests/Run.sh -v
	- name: create_zip
	run: \|
	export short_sha="$(git rev-parse --short HEAD \|\| printf 'unknown')"
	export DEBIAN_FRONTEND="noninteractive"
	apt-get update --yes
	apt-get install --yes --no-install-recommends coreutils binutils findutils rsync openssh-client patchelf zip
	rm -rf ci_artifacts
	mkdir -pv ci_artifacts
	( cd ./Windows/ && zip -r ../ci_artifacts/DICOMautomaton-latest-x86_64.zip . )
	cp ci_artifacts/DICOMautomaton-latest-x86_64.zip "ci_artifacts/DICOMautomaton-${short_sha}-x86_64.zip"
	find ci_artifacts/ -iname '*.zip' -print -execdir bash -c 'sha256sum "$@" > "$@".sha256sum' bash '{}' \;
	- name: deploy_to_github
	uses: actions/upload-artifact@v3
	with:
	name: "DICOMautomaton-exes"
	if-no-files-found: error
	path: \|
	ci_artifacts/DICOMautomaton-latest-x86_64.zip
	ci_artifacts/DICOMautomaton-latest-x86_64.zip.sha256sum
	- name: deploy_to_halclark_ca
	run: \|
	echo "${{secrets.HALCLARKCA_DEPLOY_KEY}}" > deploy_key
	chmod 600 deploy_key
	for i in `seq 1 20` ; do sleep 5 ; rsync -avP -e 'ssh -v -i deploy_key -o ServerAliveInterval=30 -o ServerAliveCountMax=5 -o StrictHostKeyChecking=no' ci_artifacts/ [email protected]:/var/www/html/ci/ && break ; done

	build_debian_buster_x86_64:
	runs-on: ubuntu-latest
	container:
	image: debian:buster
	timeout-minutes: 120
	steps:
	- uses: actions/checkout@v1
	- name: prep
	run: \|
	cp -R ./docker/builders/ci /scratch
	cp -R . /dcma
	./scripts/enable_swapfile.sh
	- name: build
	run: \|
	( ( while true ; do sleep 225 ; printf '\n\n' ; df -h ; printf '\n\n' ; free \|\| true ; printf '\n\n' ; done ) &)
	./docker/builders/ci/implementation_ci_debian_buster.sh
	git config --global --add safe.directory '*' \|\| true
	- name: test
	run: \|
	./integration_tests/Run.sh -v
	- name: create_appimage
	run: \|
	./scripts/extract_system_appimage.sh
	export DEBIAN_FRONTEND="noninteractive"
	apt-get update --yes
	apt-get install --yes --no-install-recommends coreutils binutils findutils rsync openssh-client patchelf
	rm -rf ci_artifacts
	mkdir -pv ci_artifacts
	cp DICOMautomaton*AppImage DICOMautomaton-latest-x86_64.AppImage
	mv DICOMautomaton*AppImage ci_artifacts/
	find ci_artifacts/ -iname '*AppImage' -print -execdir bash -c 'sha256sum "$@" > "$@".sha256sum' bash '{}' \;
	- name: deploy_to_github
	uses: actions/upload-artifact@v3
	with:
	name: "DICOMautomaton-AppImage"
	if-no-files-found: error
	path: \|
	ci_artifacts/DICOMautomaton-latest-x86_64.AppImage
	ci_artifacts/DICOMautomaton-latest-x86_64.AppImage.sha256sum
	- name: deploy_to_halclark_ca
	run: \|
	echo "${{secrets.HALCLARKCA_DEPLOY_KEY}}" > deploy_key
	chmod 600 deploy_key
	for i in `seq 1 20` ; do sleep 5 ; rsync -avP -e 'ssh -v -i deploy_key -o ServerAliveInterval=30 -o ServerAliveCountMax=5 -o StrictHostKeyChecking=no' ci_artifacts/ [email protected]:/var/www/html/ci/ && break ; done

	build_debian_buster_aarch64:
	runs-on: ubuntu-latest
	container:
	image: debian:buster
	timeout-minutes: 360
	steps:
	- uses: actions/checkout@v1
	- name: prep
	run: \|
	cp -R ./docker/builders/ci /scratch
	cp -R . /dcma
	./scripts/enable_swapfile.sh
	- name: build
	run: \|
	( ( while true ; do sleep 225 ; printf '\n\n' ; df -h ; printf '\n\n' ; free \|\| true ; printf '\n\n' ; done ) &)
	./docker/build_bases/debian_buster/create_foreign_chroot.sh -d /debian_buster_aarch64 -s /run_in_chroot.sh -a arm64
	cp -R /scratch /debian_buster_aarch64/scratch
	cp -R /dcma /debian_buster_aarch64/dcma
	/run_in_chroot.sh 'cd /dcma && ./docker/builders/ci/implementation_ci_debian_buster.sh'
	- name: test
	run: \|
	/run_in_chroot.sh 'cd /dcma && ./integration_tests/Run.sh -v'
	- name: create_appimage
	run: \|
	/run_in_chroot.sh 'cd /dcma && ./scripts/extract_system_appimage.sh'
	export DEBIAN_FRONTEND="noninteractive"
	apt-get update --yes
	apt-get install --yes --no-install-recommends coreutils binutils findutils rsync openssh-client patchelf
	rm -rf ci_artifacts
	mkdir -pv ci_artifacts
	cp /debian_buster_aarch64/dcma/DICOMautomaton*AppImage ci_artifacts/DICOMautomaton-latest-aarch64.AppImage
	mv /debian_buster_aarch64/dcma/DICOMautomaton*AppImage ci_artifacts/
	find ci_artifacts/ -iname '*AppImage' -print -execdir bash -c 'sha256sum "$@" > "$@".sha256sum' bash '{}' \;
	- name: deploy_to_github
	uses: actions/upload-artifact@v3
	with:
	name: "DICOMautomaton-AppImage"
	if-no-files-found: error
	path: \|
	ci_artifacts/DICOMautomaton-latest-aarch64.AppImage
	ci_artifacts/DICOMautomaton-latest-aarch64.AppImage.sha256sum
	- name: deploy_to_halclark_ca
	run: \|
	echo "${{secrets.HALCLARKCA_DEPLOY_KEY}}" > deploy_key
	chmod 600 deploy_key
	for i in `seq 1 20` ; do sleep 5 ; rsync -avP -e 'ssh -v -i deploy_key -o ServerAliveInterval=30 -o ServerAliveCountMax=5 -o StrictHostKeyChecking=no' ci_artifacts/ [email protected]:/var/www/html/ci/ && break ; done


	build_debian_buster_armhf:
	runs-on: ubuntu-latest
	container:
	image: debian:buster
	timeout-minutes: 360
	steps:
	- uses: actions/checkout@v1
	- name: prep
	run: \|
	cp -R ./docker/builders/ci /scratch
	cp -R . /dcma
	./scripts/enable_swapfile.sh
	- name: build
	run: \|
	( ( while true ; do sleep 225 ; printf '\n\n' ; df -h ; printf '\n\n' ; free \|\| true ; printf '\n\n' ; done ) &)
	./docker/build_bases/debian_buster/create_foreign_chroot.sh -d /debian_buster_armhf -s /run_in_chroot.sh -a armhf
	cp -R /scratch /debian_buster_armhf/scratch
	cp -R /dcma /debian_buster_armhf/dcma
	/run_in_chroot.sh 'cd /dcma && ./docker/builders/ci/implementation_ci_debian_buster.sh'
	- name: test
	run: \|
	/run_in_chroot.sh 'cd /dcma && ./integration_tests/Run.sh -v'
	- name: create_appimage
	run: \|
	/run_in_chroot.sh 'cd /dcma && ./scripts/extract_system_appimage.sh'
	export DEBIAN_FRONTEND="noninteractive"
	apt-get update --yes
	apt-get install --yes --no-install-recommends coreutils binutils findutils rsync openssh-client patchelf
	rm -rf ci_artifacts
	mkdir -pv ci_artifacts
	cp /debian_buster_armhf/dcma/DICOMautomaton*AppImage ci_artifacts/DICOMautomaton-latest-armhf.AppImage
	mv /debian_buster_armhf/dcma/DICOMautomaton*AppImage ci_artifacts/
	find ci_artifacts/ -iname '*AppImage' -print -execdir bash -c 'sha256sum "$@" > "$@".sha256sum' bash '{}' \;
	- name: deploy_to_github
	uses: actions/upload-artifact@v3
	with:
	name: "DICOMautomaton-AppImage"
	if-no-files-found: error
	path: \|
	ci_artifacts/DICOMautomaton-latest-armhf.AppImage
	ci_artifacts/DICOMautomaton-latest-armhf.AppImage.sha256sum
	- name: deploy_to_halclark_ca
	run: \|
	echo "${{secrets.HALCLARKCA_DEPLOY_KEY}}" > deploy_key
	chmod 600 deploy_key
	for i in `seq 1 20` ; do sleep 5 ; rsync -avP -e 'ssh -v -i deploy_key -o ServerAliveInterval=30 -o ServerAliveCountMax=5 -o StrictHostKeyChecking=no' ci_artifacts/ [email protected]:/var/www/html/ci/ && break ; done

	build_static_alpine_armv7:
	runs-on: ubuntu-latest
	timeout-minutes: 360
	steps:
	- uses: actions/checkout@v1
	- name: prep
	run: \|
	cp -R . ~/dcma
	export DEBIAN_FRONTEND="noninteractive"
	sudo apt-get update --yes
	sudo apt-get install --yes --no-install-recommends coreutils binutils findutils rsync openssh-client patchelf qemu binfmt-support qemu-user-static
	sudo ./docker/build_bases/alpine/setup_host.sh
	sudo ./scripts/enable_swapfile.sh
	- name: authenticate_with_dockerhub
	uses: docker/login-action@v2
	with:
	username: ${{ secrets.DOCKERHUB_USERNAME }}
	password: ${{ secrets.DOCKERHUB_TOKEN }}
	- name: build
	run: \|
	( ( while true ; do sleep 225 ; printf '\n\n' ; df -h ; printf '\n\n' ; free \|\| true ; printf '\n\n' ; done ) &)
	mkdir -pv ~/binaries/{bin,include,lib,share}
	cd ~/dcma/
	sudo docker run \
	--privileged \
	--network=host \
	--platform=linux/arm/v7 \
	-v ~/dcma:/dcma:rw \
	-v ~/binaries:/usr/local:rw \
	-v ~/dcma/docker/build_bases/alpine:/build_base:rw \
	-v ~/dcma/docker/builders/alpine:/scratch:rw \
	'hdclark/dicomautomaton_alpine_armv7' \
	'/dcma/docker/builders/alpine/implementation_alpine.sh'
	sudo chown --recursive $USER:$USER ~/binaries
	- name: test
	run: \|
	find ~/binaries/ -type f -execdir chmod 777 '{}' \;
	sudo cp ~/binaries/bin/dicomautomaton_dispatcher /usr/bin/
	cd ~/dcma && ./integration_tests/Run.sh -v
	- name: gather_files
	run: \|
	mkdir -pv ~/ci_artifacts/
	cp ~/binaries/bin/dicomautomaton_dispatcher ~/ci_artifacts/DICOMautomaton-${GITHUB_SHA::8}-armv7.static
	cp ~/binaries/bin/dicomautomaton_dispatcher ~/ci_artifacts/DICOMautomaton-latest-armv7.static
	find ~/ci_artifacts/ -type f -iname '*static' -print -execdir bash -c 'sha256sum "$@" > "$@".sha256sum' bash '{}' \;
	- name: deploy_to_github
	uses: actions/upload-artifact@v3
	with:
	name: "DICOMautomaton-static"
	if-no-files-found: error
	path: \|
	~/ci_artifacts/DICOMautomaton-latest-armv7.static
	~/ci_artifacts/DICOMautomaton-latest-armv7.static.sha256sum
	- name: deploy_to_halclark_ca
	run: \|
	echo "${{secrets.HALCLARKCA_DEPLOY_KEY}}" > deploy_key
	chmod 600 deploy_key
	for i in `seq 1 20` ; do sleep 5 ; rsync -avP -e 'ssh -v -i deploy_key -o ServerAliveInterval=30 -o ServerAliveCountMax=5 -o StrictHostKeyChecking=no' ~/ci_artifacts/ [email protected]:/var/www/html/ci/ && break ; done

	build_static_alpine_x86_64:
	runs-on: ubuntu-latest
	timeout-minutes: 360
	steps:
	- uses: actions/checkout@v1
	- name: prep
	run: \|
	cp -R . ~/dcma
	export DEBIAN_FRONTEND="noninteractive"
	sudo apt-get update --yes
	sudo apt-get install --yes --no-install-recommends coreutils binutils findutils rsync openssh-client patchelf qemu binfmt-support qemu-user-static
	sudo ./docker/build_bases/alpine/setup_host.sh
	sudo ./scripts/enable_swapfile.sh
	- name: authenticate_with_dockerhub
	uses: docker/login-action@v2
	with:
	username: ${{ secrets.DOCKERHUB_USERNAME }}
	password: ${{ secrets.DOCKERHUB_TOKEN }}
	- name: build
	run: \|
	( ( while true ; do sleep 225 ; printf '\n\n' ; df -h ; printf '\n\n' ; free \|\| true ; printf '\n\n' ; done ) &)
	mkdir -pv ~/binaries/{bin,include,lib,share}
	cd ~/dcma/
	sudo docker run \
	--privileged \
	--network=host \
	--platform=linux/amd64 \
	-v ~/dcma:/dcma:rw \
	-v ~/binaries:/usr/local:rw \
	-v ~/dcma/docker/build_bases/alpine:/build_base:rw \
	-v ~/dcma/docker/builders/alpine:/scratch:rw \
	'hdclark/dicomautomaton_alpine_x86_64' \
	'/dcma/docker/builders/alpine/implementation_alpine.sh'
	sudo chown --recursive $USER:$USER ~/binaries
	- name: test
	run: \|
	find ~/binaries/ -type f -execdir chmod 777 '{}' \;
	sudo cp ~/binaries/bin/dicomautomaton_dispatcher /usr/bin/
	cd ~/dcma && ./integration_tests/Run.sh -v
	- name: gather_files
	run: \|
	mkdir -pv ~/ci_artifacts/
	cp ~/binaries/bin/dicomautomaton_dispatcher ~/ci_artifacts/DICOMautomaton-${GITHUB_SHA::8}-x86_64.static
	cp ~/binaries/bin/dicomautomaton_dispatcher ~/ci_artifacts/DICOMautomaton-latest-x86_64.static
	find ~/ci_artifacts/ -type f -iname '*static' -print -execdir bash -c 'sha256sum "$@" > "$@".sha256sum' bash '{}' \;
	- name: deploy_to_github
	uses: actions/upload-artifact@v3
	with:
	name: "DICOMautomaton-static"
	if-no-files-found: error
	path: \|
	~/ci_artifacts/DICOMautomaton-latest-x86_64.static
	~/ci_artifacts/DICOMautomaton-latest-x86_64.static.sha256sum
	- name: deploy_to_halclark_ca
	run: \|
	echo "${{secrets.HALCLARKCA_DEPLOY_KEY}}" > deploy_key
	chmod 600 deploy_key
	for i in `seq 1 20` ; do sleep 5 ; rsync -avP -e 'ssh -v -i deploy_key -o ServerAliveInterval=30 -o ServerAliveCountMax=5 -o StrictHostKeyChecking=no' ~/ci_artifacts/ [email protected]:/var/www/html/ci/ && break ; done

	build_static_alpine_aarch64:
	runs-on: ubuntu-latest
	timeout-minutes: 360
	steps:
	- uses: actions/checkout@v1
	- name: prep
	run: \|
	cp -R . ~/dcma
	export DEBIAN_FRONTEND="noninteractive"
	sudo apt-get update --yes
	sudo apt-get install --yes --no-install-recommends coreutils binutils findutils rsync openssh-client patchelf qemu binfmt-support qemu-user-static
	sudo ./docker/build_bases/alpine/setup_host.sh
	sudo ./scripts/enable_swapfile.sh
	- name: authenticate_with_dockerhub
	uses: docker/login-action@v2
	with:
	username: ${{ secrets.DOCKERHUB_USERNAME }}
	password: ${{ secrets.DOCKERHUB_TOKEN }}
	- name: build
	run: \|
	( ( while true ; do sleep 225 ; printf '\n\n' ; df -h ; printf '\n\n' ; free \|\| true ; printf '\n\n' ; done ) &)
	mkdir -pv ~/binaries/{bin,include,lib,share}
	cd ~/dcma/
	sudo docker run \
	--privileged \
	--network=host \
	--platform=linux/arm64 \
	-v ~/dcma:/dcma:rw \
	-v ~/binaries:/usr/local:rw \
	-v ~/dcma/docker/build_bases/alpine:/build_base:rw \
	-v ~/dcma/docker/builders/alpine:/scratch:rw \
	'hdclark/dicomautomaton_alpine_aarch64' \
	'/dcma/docker/builders/alpine/implementation_alpine.sh'
	sudo chown --recursive $USER:$USER ~/binaries
	- name: test
	run: \|
	find ~/binaries/ -type f -execdir chmod 777 '{}' \;
	sudo cp ~/binaries/bin/dicomautomaton_dispatcher /usr/bin/
	cd ~/dcma && ./integration_tests/Run.sh -v
	- name: gather_files
	run: \|
	mkdir -pv ~/ci_artifacts/
	cp ~/binaries/bin/dicomautomaton_dispatcher ~/ci_artifacts/DICOMautomaton-${GITHUB_SHA::8}-aarch64.static
	cp ~/binaries/bin/dicomautomaton_dispatcher ~/ci_artifacts/DICOMautomaton-latest-aarch64.static
	find ~/ci_artifacts/ -type f -iname '*static' -print -execdir bash -c 'sha256sum "$@" > "$@".sha256sum' bash '{}' \;
	- name: deploy_to_github
	uses: actions/upload-artifact@v3
	with:
	name: "DICOMautomaton-static"
	if-no-files-found: error
	path: \|
	~/ci_artifacts/DICOMautomaton-latest-aarch64.static
	~/ci_artifacts/DICOMautomaton-latest-aarch64.static.sha256sum
	- name: deploy_to_halclark_ca
	run: \|
	echo "${{secrets.HALCLARKCA_DEPLOY_KEY}}" > deploy_key
	chmod 600 deploy_key
	for i in `seq 1 20` ; do sleep 5 ; rsync -avP -e 'ssh -v -i deploy_key -o ServerAliveInterval=30 -o ServerAliveCountMax=5 -o StrictHostKeyChecking=no' ~/ci_artifacts/ [email protected]:/var/www/html/ci/ && break ; done

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MapTableToParameters: document metadata stowing. #876

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MapTableToParameters: document metadata stowing. #876

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