genie_requests

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Active version now transferred to Sage-Bionetworks organization: https://github.com/Sage-Bionetworks/genie-project-requests

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Scripts for quick checks for GENIE

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genie_requests

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Name		Name	Last commit message	Last commit date
Latest commit History 230 Commits
2021-08-18_sammi_oncotree_codes		2021-08-18_sammi_oncotree_codes
2021-09-03_haley_case_selection_retrospective		2021-09-03_haley_case_selection_retrospective
2021-09-13_haley_rca_to_rcc		2021-09-13_haley_rca_to_rcc
2021-09-16_haley_dfci_brca_upload_coding		2021-09-16_haley_dfci_brca_upload_coding
2021-09-24_haley_redcap_exports_clean_up		2021-09-24_haley_redcap_exports_clean_up
2021-07-19_mike_nsclc_2.1.R		2021-07-19_mike_nsclc_2.1.R
2021-07-21_haley_nsclc_2.1_retractions.R		2021-07-21_haley_nsclc_2.1_retractions.R
2021-07-22_haley_nsclc_2.1_cbio.R		2021-07-22_haley_nsclc_2.1_cbio.R
2021-08-09_jessica_incomplete_rows_rcc.R		2021-08-09_jessica_incomplete_rows_rcc.R
2021-08-11_mike_onboarding_sop.R		2021-08-11_mike_onboarding_sop.R
2021-08-12_jessica_query_605_vicc.R		2021-08-12_jessica_query_605_vicc.R
2021-08-18_xindi_msk_panc_int_values.R		2021-08-18_xindi_msk_panc_int_values.R
2021-08-30_michele_bpc_map.R		2021-08-30_michele_bpc_map.R
2021-08-30_tom_release_11_2_wake.Rmd		2021-08-30_tom_release_11_2_wake.Rmd
2021-09-02_haley_drug_masking_validation.R		2021-09-02_haley_drug_masking_validation.R
2021-09-07_alishacoll_genie_tnf_no_mutations.sql		2021-09-07_alishacoll_genie_tnf_no_mutations.sql
2021-09-07_miseksean_genie_forum_fusion_breakpoints.R		2021-09-07_miseksean_genie_forum_fusion_breakpoints.R
2021-09-07_shawn_uhn_bladder_case_selection.R		2021-09-07_shawn_uhn_bladder_case_selection.R
2021-09-08_hbergom_genie_forum_cna_genes.R		2021-09-08_hbergom_genie_forum_cna_genes.R
2021-09-10_haley_unmapped_bpc_drugs.R		2021-09-10_haley_unmapped_bpc_drugs.R
2021-09-10_jocelyn_copy_file.R		2021-09-10_jocelyn_copy_file.R
2021-09-10_shawn_hemonc_brca_regimens.R		2021-09-10_shawn_hemonc_brca_regimens.R
2021-09-14_jessica_vicc_samples.R		2021-09-14_jessica_vicc_samples.R
2021-09-16_haley_redcap_uncoding_nas.R		2021-09-16_haley_redcap_uncoding_nas.R
2021-09-16_shawn_nsclc_sample.R		2021-09-16_shawn_nsclc_sample.R
2021-09-20_katya_unmasked_drugs.R		2021-09-20_katya_unmasked_drugs.R
2021-09-21_haley_ids_for_export_folder_clean_up.R		2021-09-21_haley_ids_for_export_folder_clean_up.R
2021-09-22_alyssa_dfci_prostate_upload.R		2021-09-22_alyssa_dfci_prostate_upload.R
2021-09-23_diana_dfci_pt_id.R		2021-09-23_diana_dfci_pt_id.R
2021-09-28_jessica_dfci_panc_complete_col.R		2021-09-28_jessica_dfci_panc_complete_col.R
2021-09-28_sammi_ovarian_sample_in_brca.R		2021-09-28_sammi_ovarian_sample_in_brca.R
2021-09-29_katya_pfizer_user_frq.R		2021-09-29_katya_pfizer_user_frq.R
2021-10-04_hira_msk_panc_upload.R		2021-10-04_hira_msk_panc_upload.R
2021-10-04_katya_pfizer_bpc_downloads.R		2021-10-04_katya_pfizer_bpc_downloads.R
2021-10-04_michele_vicc_panc_upload_date_formats.R		2021-10-04_michele_vicc_panc_upload_date_formats.R
2021-10-05_asha_dfci_panc_query_signoffs.R		2021-10-05_asha_dfci_panc_query_signoffs.R
2021-10-05_diana_dfci_panc_upload.R		2021-10-05_diana_dfci_panc_upload.R
2021-10-05_hira_panc_upload_timestamps.R		2021-10-05_hira_panc_upload_timestamps.R
2021-10-05_tom_wake.R		2021-10-05_tom_wake.R
2021-10-08_jessica_prostate_dd.R		2021-10-08_jessica_prostate_dd.R
2021-10-12_haley_genie_team_membership.R		2021-10-12_haley_genie_team_membership.R
2021-10-13_mike_bpc_release_folder.txt		2021-10-13_mike_bpc_release_folder.txt
2021-10-15_tom_dup_drug_prefix.R		2021-10-15_tom_dup_drug_prefix.R
2021-10-18_mike_drug_masking_blanket.R		2021-10-18_mike_drug_masking_blanket.R
2021-10-19_jocelyn_copy_files.R		2021-10-19_jocelyn_copy_files.R
2021-10-19_shawn_bpc_dfci_prostate_ids.R		2021-10-19_shawn_bpc_dfci_prostate_ids.R
2021-10-20_mike_drug_masking_blanket_all_cohorts.R		2021-10-20_mike_drug_masking_blanket_all_cohorts.R
2021-10-20_shawn_drug_masking_blanket_all_cohorts.R		2021-10-20_shawn_drug_masking_blanket_all_cohorts.R
2021-10-22_haley_permission_query_speed.R		2021-10-22_haley_permission_query_speed.R
2021-10-26_haley_dd_vs_import.R		2021-10-26_haley_dd_vs_import.R
2021-10-26_jocelyn_move_file.R		2021-10-26_jocelyn_move_file.R
2021-10-26_uhn_move_file_upload.R		2021-10-26_uhn_move_file_upload.R
2021-10-28_haley_ncit_drug_coding.R		2021-10-28_haley_ncit_drug_coding.R
2021-10-28_jessica_checkbox_variables.R		2021-10-28_jessica_checkbox_variables.R
2021-10-28_msk_age_non_numeric.R		2021-10-28_msk_age_non_numeric.R
2021-11-01_haley_ncit_codes.py		2021-11-01_haley_ncit_codes.py
2021-11-01_haley_synapse_table_updates.R		2021-11-01_haley_synapse_table_updates.R
2021-11-03_haley_silence_synapse_msg.R		2021-11-03_haley_silence_synapse_msg.R
2021-11-04_tom_11.4_chop.R		2021-11-04_tom_11.4_chop.R
2021-11-09_jocelyn_move_file.R		2021-11-09_jocelyn_move_file.R
2021-11-10_haley_case_selection_modification_check.R		2021-11-10_haley_case_selection_modification_check.R
2021-11-10_sammi_missing_columns_dfci_panc.R		2021-11-10_sammi_missing_columns_dfci_panc.R
2021-11-12_shawn_nsclc_phase1_samples.R		2021-11-12_shawn_nsclc_phase1_samples.R
2021-11-15_haley_case_list_mult_sample.R		2021-11-15_haley_case_list_mult_sample.R
2021-11-16_shawn_bladder_uhn_eligible_cases.R		2021-11-16_shawn_bladder_uhn_eligible_cases.R
2021-11-16_xindi_empty_columns.R		2021-11-16_xindi_empty_columns.R
2021-11-19_haley_cbioportal_check.R		2021-11-19_haley_cbioportal_check.R
2021-11-19_ritika_nsclc_sample_list.R		2021-11-19_ritika_nsclc_sample_list.R
2021-11-19_shawn_genie_death_int.R		2021-11-19_shawn_genie_death_int.R
2021-11-29_sammi_dfci_tm_data.R		2021-11-29_sammi_dfci_tm_data.R
2021-12-01_michelle_dd_branching_logic.R		2021-12-01_michelle_dd_branching_logic.R
2021-12-01_ritika_missing_rx_treatment_start.R		2021-12-01_ritika_missing_rx_treatment_start.R
2021-12-01_tom_release_schedule.R		2021-12-01_tom_release_schedule.R
2021-12-02_haley_synapse_config_arg.py		2021-12-02_haley_synapse_config_arg.py
2021-12-03_celeste_move_upload_file.R		2021-12-03_celeste_move_upload_file.R
2021-12-06_michele_missing_patient.R		2021-12-06_michele_missing_patient.R
2021-12-07_haley_migrate_qa_files.sh		2021-12-07_haley_migrate_qa_files.sh
2021-12-08_xindi_variable_cross_ref.R		2021-12-08_xindi_variable_cross_ref.R
2021-12-13_xindi_combine_variable_synopsis.R		2021-12-13_xindi_combine_variable_synopsis.R
2021-12-20_tom_mg_variant_check.R		2021-12-20_tom_mg_variant_check.R
2021-12-21_dfci_prostate_upload_check.R		2021-12-21_dfci_prostate_upload_check.R
2021-12-23_haley_update_hemonc_ncit.R		2021-12-23_haley_update_hemonc_ncit.R
2021-12-23_natalie_mg_cna_file.R		2021-12-23_natalie_mg_cna_file.R
2021-12-29_tom_mg_checks.R		2021-12-29_tom_mg_checks.R
2022-01-06_haley_mg_vital_inconsistencies.R		2022-01-06_haley_mg_vital_inconsistencies.R
2022-01-06_haley_mg_vital_inconsistencies.Rmd		2022-01-06_haley_mg_vital_inconsistencies.Rmd
2022-01-06_jocelyn_copy_files.R		2022-01-06_jocelyn_copy_files.R
2022-01-06_natalie_assay_information.sql		2022-01-06_natalie_assay_information.sql
2022-01-10_courtney_mg_file_mod_views.R		2022-01-10_courtney_mg_file_mod_views.R
2022-01-10_courtney_mg_file_mod_views.sh		2022-01-10_courtney_mg_file_mod_views.sh
2022-01-12_marissa_intragenic_fusions.R		2022-01-12_marissa_intragenic_fusions.R
2022-01-13_michele_upload_empty_rows.R		2022-01-13_michele_upload_empty_rows.R
2022-01-14_100k_tmb_by_site.R		2022-01-14_100k_tmb_by_site.R
2022-01-14_100k_tmb_by_site.sh		2022-01-14_100k_tmb_by_site.sh
2022-01-14_michele_rm_extra_instance.R		2022-01-14_michele_rm_extra_instance.R
2022-01-19_ashley_nsclc_patient.R		2022-01-19_ashley_nsclc_patient.R
2022-01-24_jessica_derived_vars.R		2022-01-24_jessica_derived_vars.R
2022-01-24_jocelyn_11.6.R		2022-01-24_jocelyn_11.6.R
2022-01-24_michelle_date_formats.R		2022-01-24_michelle_date_formats.R
2022-01-24_tom_duplicated_variants.R		2022-01-24_tom_duplicated_variants.R

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