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@hivlab

Virlab

Research Group of HIV Studies, Department of Microbiology, Faculty of Medicine, University of Tartu

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  1. sarscov2-variation sarscov2-variation Public

    SARS-CoV-2 sequencing workflow

    Python 2

  2. discover-virome discover-virome Public

    discover-virome: identify and quantify viruses from metagenomic assemblies

    Python 3 1

  3. virome-wrappers virome-wrappers Public

    snakemake wrappers

    Python 1

Repositories

Showing 10 of 47 repositories
  • mapto Public

    Map reads to random stuff using bowtie2

    hivlab/mapto’s past year of commit activity
    Shell 0 0 0 0 Updated Mar 19, 2024
  • cdhit Public Forked from weizhongli/cdhit

    Automatically exported from code.google.com/p/cdhit

    hivlab/cdhit’s past year of commit activity
    Perl 0 GPL-2.0 133 0 0 Updated Mar 2, 2023
  • sarscov2-epidemiology Public archive

    Visualisation of SARS-CoV-2 genomic epidemiology

    hivlab/sarscov2-epidemiology’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 20, 2023
  • minced Public Forked from ctSkennerton/minced

    Mining CRISPRs in Environmental Datasets

    hivlab/minced’s past year of commit activity
    Java 0 GPL-3.0 18 0 0 Updated Feb 10, 2023
  • virome-wrappers Public

    snakemake wrappers

    hivlab/virome-wrappers’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Apr 11, 2022
  • blast-virome Public

    Virome taxonomic profiling using BLAST

    hivlab/blast-virome’s past year of commit activity
    Python 0 0 0 0 Updated Mar 21, 2022
  • snakemake-wrappers Public Forked from snakemake/snakemake-wrappers

    This is the development home of the Snakemake wrapper repository, see

    hivlab/snakemake-wrappers’s past year of commit activity
    Python 0 187 0 0 Updated Mar 16, 2022
  • sarscov2-variation Public

    SARS-CoV-2 sequencing workflow

    hivlab/sarscov2-variation’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Jan 26, 2022
  • discover-virome Public

    discover-virome: identify and quantify viruses from metagenomic assemblies

    hivlab/discover-virome’s past year of commit activity
    Python 3 MIT 1 0 1 Updated Jan 20, 2022
  • metaTOR Public Forked from koszullab/metaTOR

    Metagenomic binning based on Hi-C data

    hivlab/metaTOR’s past year of commit activity
    Python 0 GPL-3.0 10 0 0 Updated Jan 10, 2022
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