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Refactor, change compression to xz
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holgern committed Feb 29, 2024
1 parent 92e3462 commit 99cbcac
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Showing 2,276 changed files with 56 additions and 68 deletions.
2 changes: 1 addition & 1 deletion .flake8
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Expand Up @@ -4,4 +4,4 @@ max-line-length = 88
; E203 for black
; B008 does not like fastapi Depends
; B018: Found useless expression. Either assign it to a variable or remove it.
extend-ignore = E203,B008,B018
extend-ignore = E203,B008,B018
16 changes: 8 additions & 8 deletions .pre-commit-config.yaml
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Expand Up @@ -3,13 +3,13 @@ default_language_version:
python: python3
repos:
- repo: https://github.com/psf/black
rev: 22.12.0
rev: 24.2.0
hooks:
- id: black
exclude: ^(rdatasets_orig/)
args: [--skip-string-normalization]
- repo: https://github.com/myint/autoflake
rev: v2.0.0
rev: v2.3.0
hooks:
- id: autoflake
exclude: ^(rdatasets_orig/)
Expand All @@ -19,7 +19,7 @@ repos:
- --remove-all-unused-imports
- --remove-duplicate-keys
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v4.4.0
rev: v4.5.0
hooks:
- id: check-toml
- id: check-yaml
Expand All @@ -28,7 +28,7 @@ repos:
- id: trailing-whitespace
exclude: ^(rdatasets_orig/)
- repo: https://github.com/PyCQA/flake8
rev: "6.0.0"
rev: "7.0.0"
hooks:
- id: flake8
name: flake8 except __init__.py
Expand All @@ -41,21 +41,21 @@ repos:
args: [--config, .flake8, "--extend-ignore=F401"] # ignore unused imports in __init__.py
files: /__init__\.py$
- repo: https://github.com/PyCQA/isort
rev: 5.12.0
rev: 5.13.2
hooks:
- id: isort
args: ["--profile", "black"]
name: isort except __init__.py
exclude: (^(rdatasets_orig/)|/__init__\.py$)
- repo: https://github.com/myint/docformatter
rev: v1.4
rev: v1.7.5
hooks:
- id: docformatter
exclude: ^(rdatasets_orig/)
args: ["--in-place", "--wrap-summaries=88"]
- repo: https://github.com/asottile/pyupgrade
rev: v3.3.1
rev: v3.15.1
hooks:
- id: pyupgrade
exclude: ^(rdatasets_orig/)
args: ["--py37-plus"]
args: ["--py37-plus"]
2 changes: 1 addition & 1 deletion MANIFEST.in
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Expand Up @@ -21,4 +21,4 @@ prune convertCSVtoPickle.py
prune convertHTMLtoPickle.py

global-exclude *.py[cod] *.egg *.egg-info
global-exclude *~ *.bak *.swp
global-exclude *~ *.bak *.swp
20 changes: 7 additions & 13 deletions convertCSVtoPickle.py
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@@ -1,5 +1,4 @@
import os
from os.path import expanduser

import pandas as pd

Expand All @@ -8,24 +7,19 @@
data_out_dir = os.path.join('./', "rdatasets//_data//")
datasets = pd.read_csv(os.path.join(data_dir, "datasets.csv"))
datasets.to_pickle(
os.path.join(data_out_dir, "datasets.pkl.compress"), compression="gzip"
os.path.join(data_out_dir, "datasets.pkl.compress"), compression="xz"
)
for i in range(len(datasets)):
row = datasets.iloc[i]
package = row["Package"]
item = row["Item"].split(" ")[0]
print("{} - {}".format(package, item))
print(f"{package} - {item}")
try:
dataset = pd.read_csv(os.path.join(data_dir, f"csv//{package}//{item}.csv"))
except Exception as e:
print(e)
dataset = pd.read_csv(
os.path.join(
data_dir, "csv//{}//{}.csv".format(package, item)
)
)
except:
dataset = pd.read_csv(
os.path.join(
data_dir, "csv//{}//{}.csv".format(package, item)
),
os.path.join(data_dir, f"csv//{package}//{item}.csv"),
encoding="ISO-8859-1",
)
directory = os.path.join(data_out_dir, "%s" % (package))
Expand All @@ -35,5 +29,5 @@
dataset = dataset.drop(dataset.columns[0], axis=1)
dataset.to_pickle(
os.path.join(directory, "%s.pkl.compress" % (item)),
compression="gzip",
compression="xz",
)
7 changes: 2 additions & 5 deletions convertHTMLtoPickle.py
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@@ -1,6 +1,5 @@
import os
import pickle
from os.path import expanduser

import html2text
import pandas as pd
Expand All @@ -15,13 +14,11 @@
row = datasets.iloc[i]
package = row["Package"]
item = row["Item"].split(" ")[0]
print("{} - {}".format(package, item))
print(f"{package} - {item}")
if package not in descr:
descr[package] = {}

html_file = os.path.join(
data_dir, "doc//{}//{}.html".format(package, item)
)
html_file = os.path.join(data_dir, f"doc//{package}//{item}.html")
with open(html_file, encoding="utf8") as f:
content = f.read().splitlines()
descr[package][item] = html2text.html2text('\n'.join(content))
Expand Down
2 changes: 1 addition & 1 deletion pyproject.toml
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Expand Up @@ -50,4 +50,4 @@ deps =
pandas
commands =
pytest
"""
"""
3 changes: 0 additions & 3 deletions rdatasets/__init__.py
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Expand Up @@ -2,7 +2,4 @@
# See LICENSE for license details.


from .data import *


__all__ = [s for s in dir() if not s.startswith('_')]
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