update doc

huangyh09 · Nov 4, 2020 · caa198c · caa198c
1 parent 2a514df
commit caa198c
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Showing 2 changed files with 9 additions and 5 deletions.
diff --git a/doc/conf.py b/doc/conf.py
@@ -37,17 +37,19 @@
         pass
 
 
-notebooks_url = "https://sourceforge.net/projects/brie-rna/files/examples/brie_quantify/"
+notebooks_url = "https://github.com/huangyh09/brie-tutorials/raw/main/"
 notebooks = [
-    "multiple_sclerosis.ipynb",
+    "msEAE/brie2_msEAE.ipynb",
+    "scNTseq/brie2_scNTseq.ipynb",
+    "dentateGyrus/brie2_dentateGyrus.ipynb"
 ]
+
 for nb in notebooks:
     try:
-        urlretrieve(notebooks_url + nb, nb)
+        urlretrieve(notebooks_url + nb, nb.split('/')[1])
     except:
         pass
 
-
 # -- General configuration ------------------------------------------------
 
 # If your documentation needs a minimal Sphinx version, state it here.

diff --git a/doc/index.rst b/doc/index.rst
@@ -93,5 +93,7 @@ quantification in single cells
    :maxdepth: 1
    :hidden:
 
-   multiple_sclerosis
+   brie2_msEAE
+   brie2_scNTseq
+   brie2_dentateGyrus
    Prior_distribution_BRIE2