Merge pull request #11 from icgc-argo/song-get-analysis-fix

add analysis_id as prefix for analysis json file
icgc-argo-workflows · Mar 16, 2020 · 321f611 · 321f611
2 parents b45093d + 9867b6d
commit 321f611
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/process/song_get_analysis.nf b/process/song_get_analysis.nf
@@ -27,14 +27,14 @@ process songGetAnalysis {
         val analysis_id
 
     output:
-        path 'analysis.json', emit: json
+        path '*.analysis.json', emit: json
 
 
     """
     export CLIENT_SERVER_URL=${params.song_url}
     export CLIENT_ACCESS_TOKEN=${params.api_token}
     export CLIENT_STUDY_ID=${study_id}
 
-    curl -X GET "${params.song_url}/studies/$study_id/analysis/$analysis_id" -H  "accept: */*" > analysis.json
+    curl -X GET "${params.song_url}/studies/$study_id/analysis/$analysis_id" -H  "accept: */*" > ${analysis_id}.analysis.json
     """
 }