Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
inoue0426 authored Aug 30, 2024
1 parent cdd6fea commit 75c57f7
Showing 1 changed file with 12 additions and 1 deletion.
13 changes: 12 additions & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -8,6 +8,18 @@ This is the official implementation for **drGAT: Attention-Guided Gene Assessmen

This model is created to understand how genes influence Drug Response using Graph Attention Networks (GAT) on heterogeneous networks of drugs, cells, and genes. It predicts Drug Response based on the attention coefficients generated during this process. This has been implemented in Python.

## Citation

```
@article{inoue2024drgat,
title={drGAT: Attention-Guided Gene Assessment of Drug Response Utilizing a Drug-Cell-Gene Heterogeneous Network},
author={Inoue, Yoshitaka and Lee, Hunmin and Fu, Tianfan and Luna, Augustin},
journal={ArXiv},
year={2024},
publisher={arXiv}
}
```

## Quick start

This quick start guide demonstrates how to run drGAT predictions on both CPU and GPU, completing the process within seconds.
Expand All @@ -21,7 +33,6 @@ docker run -it -p 9999:9999 inoue0426/drgat

Then access to http://localhost:9999/notebooks/Tutorial.ipynb and run all cells.


## Training

For re-training the model, refer to model_training.ipynb. If you want to use your dataset, create_dataset.ipynb might be useful.
Expand Down

0 comments on commit 75c57f7

Please sign in to comment.