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update readme
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inoue0426 committed Aug 30, 2024
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Expand Up @@ -10,7 +10,7 @@ This model is created to understand how genes influence Drug Response using Grap

## Quick start

This quick start allows you to run the drGAT training with the dataset on CPU and GPU. If you just would like to predict, run the preprocess and evaluation section. For demonstration purposese, the tutorial notebook runs a limited number of epochs, so the notebook run in a few minutes.
This quick start allows you to run the drGAT training with the dataset on CPU and GPU. If you just would like to predict, run the preprocess and evaluation section. For demonstration purposes, the tutorial notebook runs a limited number of epochs, so the notebook run in a few minutes.

```shell
git clone [email protected]:inoue0426/drGAT.git
Expand All @@ -22,6 +22,11 @@ docker run -it -p 9999:9999 inoue0426/drgat
Then access to http://localhost:9999/notebooks/Tutorial.ipynb


## Training

For re-training the model, refer to model_training.ipynb. If you want to use your dataset, generate_dataset.ipynb might be useful.


## Requirement

```
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## Environment

Our experiment was conducted on Ubuntu with an NVIDIA A100 Tensor Core GPU.
If you want to re-train model, we reccomend to use GPU.
If you want to re-train model, we recommend using GPU.

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