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walkowif committed Dec 6, 2023
1 parent 594b5e5 commit bcf6d7f
Showing 1 changed file with 17 additions and 14 deletions.
31 changes: 17 additions & 14 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -34,23 +34,26 @@ COPY --chmod=0755 [\
# Install sysdeps
RUN ./install_sysdeps.sh ${DISTRIBUTION}

RUN R --version
RUN java -version

# Install R packages
RUN ./install_cran_pkgs.R ${DISTRIBUTION} && \
./install_bioc.R ${BIOC_VERSION} && \
./install_bioc_pkgs.R ${DISTRIBUTION} && \
./install_gh_pkgs.R ${DISTRIBUTION} && \
./install_other_pkgs.R ${DISTRIBUTION} && \
./install_pip_pkgs.py ${DISTRIBUTION} && \
rm -f install_sysdeps.sh \
install_cran_pkgs.R \
install_bioc.R \
install_bioc_pkgs.R \
install_gh_pkgs.R \
install_other_pkgs.R \
install_pip_pkgs.py
# RUN ./install_cran_pkgs.R ${DISTRIBUTION} && \
# ./install_bioc.R ${BIOC_VERSION} && \
# ./install_bioc_pkgs.R ${DISTRIBUTION} && \
# ./install_gh_pkgs.R ${DISTRIBUTION} && \
# ./install_other_pkgs.R ${DISTRIBUTION} && \
# ./install_pip_pkgs.py ${DISTRIBUTION} && \
# rm -f install_sysdeps.sh \
# install_cran_pkgs.R \
# install_bioc.R \
# install_bioc_pkgs.R \
# install_gh_pkgs.R \
# install_other_pkgs.R \
# install_pip_pkgs.py

# Prevent pushing of the image without pdflatex installed.
RUN pdflatex --version
# RUN pdflatex --version

# Run RStudio
CMD ["/init"]

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