Merge pull request #18 from rffrancon/master

fix: use of inline keyword is different beyond gnu11; removed inline …
iqbal-lab · Feb 22, 2018 · 59658af · 59658af
2 parents 0fb3189 + d0ccd4a
commit 59658af
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/include/cortex_var/core/error_correction.h b/include/cortex_var/core/error_correction.h
@@ -75,7 +75,7 @@ void error_correct_list_of_files(StrBuf* list_fastq,char quality_cutoff, char as
 				 boolean add_greedy_bases_for_better_bwt_compression,
 				 int num_greedy_bases, boolean rev_comp_read_if_on_reverse_strand);
 
-inline void error_correct_file_against_graph(char* fastq_file, char quality_cutoff, char ascii_qual_offset,
+void error_correct_file_against_graph(char* fastq_file, char quality_cutoff, char ascii_qual_offset,
 					     dBGraph *db_graph, char* outfile,
 					     uint64_t *bases_modified_count_array,//distribution across reads; how many of the read_length bases are fixed
 					     uint64_t *posn_modified_count_array,//where in the read are we making corrections?

diff --git a/src/cortex_var/core/error_correction.c b/src/cortex_var/core/error_correction.c
@@ -101,7 +101,7 @@ void error_correct_list_of_files(StrBuf* list_fastq,char quality_cutoff, char as
 }
 
 //outputs fastQ unless add_greedy_bases_for_better_bwt_compression==true, in which case is for 1000genomes, and they want fastA
-inline void error_correct_file_against_graph(char* fastq_file, char quality_cutoff, char ascii_qual_offset,
+void error_correct_file_against_graph(char* fastq_file, char quality_cutoff, char ascii_qual_offset,
 					     dBGraph *db_graph, char* outfile,
 					     uint64_t *bases_modified_count_array,//distribution across reads; how many of the read_length bases are fixed
 					     uint64_t *posn_modified_count_array,//where in the read are we making corrections?