Bash scripts and Ipython notebook for running the FASTQC program over multiple samples and analyze its quality control reports
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FASTQC/qu_cmd: directory with the bash scripts generated by 'fastqc.run.sh' (one script for each FASTQ file)
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example_dataset_guthub: directory with 50 FASTQ sample files (only 100 reads per file, for simplicity), organized in 5 batches/releases
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fastqc.run.sh: script to generate FASTQ file-specific scripts for running fastqc