Add option to specify custom_log_path and path to logging config json… #1379

	name: Run pytest on linux (conda)
	on:
	push:
	branches:
	- "**"
	pull_request:
	branches: [ master ]
	workflow_dispatch:

	jobs:
	Install-miniconda-and-run-pytest:
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -l {0}
	strategy:
	matrix:
	python-version: ["3.10", "3.11"]
	steps:
	- uses: actions/checkout@v4
	- uses: conda-incubator/setup-miniconda@v3
	with:
	auto-update-conda: true
	activate-environment: cellpy_dev
	environment-file: github_actions_environment.yml
	python-version: ${{ matrix.python-version }}

	- name: Conda info
	run: conda info

	- name: Conda list
	run: conda list

	- name: Install mdbtools
	run: \|
	sudo apt-get update
	sudo apt-get install -y mdbtools

	- name: pytest
	run: pytest

	- name: pytest with nbmake (cellpy_batch_processing)
	run: \|
	python -m pip install -e .
	python -m pip install kaleido==0.1.*
	python -m ipykernel install --user --name=cellpy_dev
	pytest -v --nbmake --nbmake-timeout=3600 --nbmake-kernel=cellpy_dev "examples/cellpy batch utility/cellpy_batch_processing.ipynb"

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