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Update changelog
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jlumpe committed Oct 7, 2022
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# Changelog


## 0.6.0
## 1.0.0

* New features
* `tree` command for generating hierarchical clustering trees from distance matrices.
* `tree` command for generating hierarchical clustering trees from distance matrices.
* General
* Preferred extensions for genome database files and signatures files have been changed from
* Preferred extensions for genome database files and signatures files have been changed from
`.db` and `.h5` to `.gdb` and `.gs`.
* Performance improvements
* Use process-based parallelism by default for parsing multiple sequence files (much faster).
* Speed up `gambit dist` with `-s` option applied.
* Use process-based parallelism by default for parsing multiple sequence files (much faster).
* Speed up `gambit dist` with `-s` option applied.
* CLI
* Strip directory and extension from input file IDs. This applies to CSV output for querying and
distance calculation and IDs in generated signature files.
* `-k` and `--prefix` parameters now default to values used RefSeq database.
* Add option to specify number of cores to use.
* Add option to disable progress bar printing.
* Strip directory and extension from input file IDs. This applies to CSV output for querying and
distance calculation and IDs in generated signature files.
* `-k` and `--prefix` parameters now default to values used RefSeq database.
* Add option to specify number of cores to use.
* Add option to disable progress bar printing.


## 0.5.1
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