What's new in this version ?
- More verbose : messages, warnings and errors at the different steps to inform if there is a format issue or the effect of the different filters.
- More optimized : a smarter implementation now enables the usage of several million permutations/simulations in a memory-efficient manner. It will still require more computation time but it is now feasible.
- Unit tests to ensure safe development of new features without backtrack.
- User can specify custom regions to test each gene against. Hence specific trans-effect can be interrogated.
Installation
R CMD INSTALL sQTLseekeR_2.1.tar.gz
For dependencies see documentation there.