CTCF-motif directionality controls CTCF-mediated chromatin interactions and correlates with topological domain structure
contains the data analysis workflow used in the report. E.g creation of naively created loops and loops under constraints like motive directionality and length. Furthermore, a workflow to check if particular ctcf loop types cross topological domain borders.
workflow to check for enrichment of particular tfs within ctcf mediated loops. ANOVA and Tukeyhsk
mainly a function like bedtools shuffle but for GRanges objects.
contains object containing the ctcf chip-seq bs but with motif and motif orentation.
object containing simulated loops.
object containing simulated ctcf loops but under constraints like loop length, motif and motif direcrtionality.