Update edit taxon (#4386)

kartoza · Dec 2, 2024 · 3916978 · 3916978
1 parent c733939
commit 3916978
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Showing 3 changed files with 16 additions and 5 deletions.
diff --git a/bims/models/taxonomy.py b/bims/models/taxonomy.py
@@ -1,4 +1,5 @@
 import json
+import re
 from datetime import date
 
 from django.conf import settings
@@ -358,6 +359,15 @@ def full_species_name(self):
     def species_name(self):
         return self.get_taxon_rank_name(TaxonomicRank.SPECIES.name)
 
+    @property
+    def specific_epithet(self):
+        species_name = self.species_name
+        genus_name = self.get_taxon_rank_name(TaxonomicRank.GENUS.name)
+        if genus_name in species_name:
+            pattern = r'^' + re.escape(genus_name) + r'\s+'
+            return re.sub(pattern, '', species_name).strip()
+        return species_name
+
     @property
     def sub_species_name(self):
         return self.get_taxon_rank_name(TaxonomicRank.SUBSPECIES.name)

diff --git a/bims/templates/edit_taxon.html b/bims/templates/edit_taxon.html
@@ -86,7 +86,7 @@ <h2>
                     <input type="text" name="canonical_name" id="canonical_name"
                            class="form-control form-control-sm"
                            placeholder=""
-                           value="{{ object.taxon_name }}" >
+                           value="{{ object.canonical_name }}" >
                 </div>
             </div>
 

diff --git a/bims/views/edit_taxon_view.py b/bims/views/edit_taxon_view.py
@@ -56,12 +56,13 @@ def get_context_data(self, **kwargs):
             {'rank': 'Class', 'field': 'class_name'},
             {'rank': 'Order', 'field': 'order_name'},
             {'rank': 'Family', 'field': 'family_name'},
-            {'rank': 'Subfamily', 'field': 'sub_family_name'},
+            {'rank': 'SubFamily', 'field': 'sub_family_name'},
             {'rank': 'Tribe', 'field': 'tribe_name'},
-            {'rank': 'Subtribe', 'field': 'sub_tribe_name'},
+            {'rank': 'SubTribe', 'field': 'sub_tribe_name'},
             {'rank': 'Genus', 'field': 'genus_name'},
-            {'rank': 'Species', 'field': 'species_name'},
-            {'rank': 'Subspecies', 'field': 'sub_species_name'}
+            {'rank': 'SpeciesGroup', 'field': 'species_group'},
+            {'rank': 'Species', 'field': 'specific_epithet'},
+            {'rank': 'SubSpecies', 'field': 'sub_species_name'}
         ]
         return context