Update test files after changes in NCBI Taxonomy #93
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| name: Retest | |
| on: [push, workflow_dispatch] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"] | |
| include: | |
| - os: ubuntu-20.04 | |
| python-version: "3.6" | |
| steps: | |
| - run: echo "🎉 The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "🐧 This job is now running on a ${{ runner.os }} server hosted by GitHub!" | |
| - run: echo "🔎 The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v2 | |
| - run: echo "💡 The ${{ github.repository }} repository has been cloned to the runner." | |
| - run: echo "🖥️ The workflow is now ready to test your code on the runner." | |
| - name: List files in the repository | |
| run: | | |
| ls ${{ github.workspace }} | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 recentrifuge/ rcf remock retaxdump retest rextract --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. | |
| flake8 recentrifuge/ rcf remock retaxdump retest rextract --count --exit-zero --max-complexity=10 --max-line-length=79 --statistics | |
| - name: Test with retest | |
| run: | | |
| ./retest -d -l -r | |
| - run: echo "🍏 This job's status is ${{ job.status }}." |