🤖 update workflow paths

kids-first · Dec 19, 2024 · 7d86782 · 7d86782
1 parent 763f5c8
commit 7d86782
Showing 1 changed file with 6 additions and 14 deletions.
diff --git a/.github/workflows/update_docker_tables.yml b/.github/workflows/update_docker_tables.yml
@@ -16,22 +16,14 @@ jobs:
         name: Checkout Repo
         with:
           ref: ${{ github.head_ref }}
-      - id: make-bwagatk-alignment-table
-        name: Make Docker Table for BWA/GATK Alignment Workflow
+      - id: make-single-sample-genotyping-table
+        name: Make Docker Table for GATK Genotyping Workflow
         run: |
-          python .github/scripts/workflow_to_docker_table.py --output_file docs/dockers_bwagatk_alignment.md workflows/kfdrc_alignment_wf.cwl
-      - id: make-gatk-cramtogvcf-table
-        name: Make Docker Table for GATK CRAM to gVCF Workflow
+          python .github/scripts/workflow_to_docker_table.py --output_file docs/dockers_gatk_genotyping.md workflows/kfdrc-single-sample-genotyping-wf.cwl
+      - id: make-germline-variant-table
+        name: Make Docker Table for Germline Variant Workflow
         run: |
-          python .github/scripts/workflow_to_docker_table.py --output_file docs/dockers_gatk_cramtogvcf.md workflows/kfdrc-gatk-haplotypecaller-wf.cwl
-      - id: make-sentieon-alignment-table
-        name: Make Docker Table for Sentieon Alignment Workflow
-        run: |
-          python .github/scripts/workflow_to_docker_table.py --output_file docs/dockers_sentieon_alignment.md workflows/kfdrc_sentieon_alignment_wf.cwl
-      - id: make-sentieon-gvcf-table
-        name: Make Docker Table for Sentieon gVCF Workflow
-        run: |
-          python .github/scripts/workflow_to_docker_table.py --output_file docs/dockers_sentieon_gvcf.md workflows/kfdrc_sentieon_gvcf_wf.cwl
+          python .github/scripts/workflow_to_docker_table.py --output_file docs/dockers_germline_variant.md workflows/kfdrc-germline-variant-wf.cwl
       - id: cpr
         name: Create Pull Request
         uses: peter-evans/create-pull-request@v5