update

.devcontainer/devcontainer.json

@@ -22,7 +22,13 @@
         "charliermarsh.ruff",
         "GitHub.copilot",
         "njpwerner.autodocstring",
-        "streetsidesoftware.code-spell-checker"
+        "streetsidesoftware.code-spell-checker",
+        "reditorsupport.r",
+        "mathematic.vscode-pdf",
+        "quarto.quarto",
+        "shd101wyy.markdown-preview-enhanced",
+        "notzaki.pandocciter"
+
       ]
     }
   },

.gitignore

@@ -4,6 +4,5 @@ paper/.quarto
 paper/site_libs
 paper/index_files
 notebooks/.ipynb_checkpoints
-output/_tex/
-output/site_libs
+output/*
 pixi.lock

notebooks/demo_py.ipynb

@@ -698,12 +698,12 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 16,
+   "execution_count": 37,
    "id": "5fbc2087-d677-4a8b-bec6-cfdbde8561c6",
    "metadata": {},
    "outputs": [],
    "source": [
-    "m.save(\"../data/sdmap.html\")"
+    "m.save(\"../data/_fig_sdmap.html\")"
    ]
   },
   {
@@ -769,21 +769,21 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 23,
+   "execution_count": 40,
    "id": "30f329a7-3a4f-4e59-99e8-4083b4cd6232",
    "metadata": {},
    "outputs": [],
    "source": [
     "table = sd[['n_total_pop', 'median_household_income']].head(10)\n",
     "table.columns = table.columns.str.replace(\"_\",\"-\")\n",
     "\n",
-    "table.to_html(\"../paper/_table_sd_table.html\")\n",
-    "table.to_latex(\"../paper/_table_sd_table.md\", longtable=True)"
+    "table.to_html(\"../paper/_table_sd_table.html\", index=False)\n",
+    "table.to_latex(\"../paper/_table_sd_table.md\", longtable=True, caption='Blockgroups in San Diego')"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 24,
+   "execution_count": 39,
    "id": "ec7637c1-8512-4d35-837f-9742cdd9be95",
    "metadata": {},
    "outputs": [
@@ -881,7 +881,7 @@
        "9       1151.0                  79725.0"
       ]
      },
-     "execution_count": 24,
+     "execution_count": 39,
      "metadata": {},
      "output_type": "execute_result"
     }