merged with main

.conda/elements/meta.yaml

@@ -3,7 +3,7 @@
 {% set macos_compiler_version = "16" %}
 
 package:
-  name: elements
+  name: elements-cpu
   version: {{ version }}
 
 source:

.conda/evpfft-dev/cpu/meta.yaml

@@ -3,7 +3,7 @@
 {% set macos_compiler_version = "16" %}
 
 package:
-  name: evpfft-dev
+  name: dev-evpfft-cpu
   version: {{ version }}
 
 build:

.conda/evpfft/cpu/meta.yaml

@@ -3,7 +3,7 @@
 {% set macos_compiler_version = "16" %}
 
 package:
-  name: evpfft
+  name: fierro-evpfft-cpu
   version: {{ version }}
 
 source:

.conda/fierro-dev/cpu/meta.yaml

@@ -3,7 +3,7 @@
 {% set macos_compiler_version = "16" %}
 
 package:
-  name: fierro-dev
+  name: dev-fe-cpu
   version: {{ version }}
 
 build:

.conda/fierro-gui/meta.yaml

@@ -1,5 +1,5 @@
 package: 
-  name: fierro_gui
+  name: fierro-gui
   version: 1
 
 source:

.conda/fierro/cpu/build.sh

@@ -21,4 +21,4 @@ cmake .. \
       -D MPI_CXX_COMPILER="$BUILD_PREFIX/bin/mpicxx" \
       -D VECTOR_ARCH_FLAGS="$VECTOR_ARCH_FLAGS" \
 
-make -j 10 install
+make -j 10 install

.conda/fierro/cpu/meta.yaml

@@ -7,7 +7,7 @@
 #{% set mpi_version = "4.1" %}
 
 package:
-  name: fierro-cpu
+  name: fierro-fe-cpu
   version: {{ version }}
 
 source:

.conda/heffte/cpu/meta.yaml

@@ -3,7 +3,7 @@
 {% set macos_compiler_version = "16" %}
 
 package:
-  name: fierro-heffte
+  name: heffte-cpu
   version: {{ version }}
 
 source:
@@ -35,7 +35,7 @@ about:
   license_family: BSD
   license_file: LICENSE
   summary:
-    LANL Fierro's dependency for EVPFFT solutions
+    LANL Fierro's dependency for EVPFFT solver
   description:
     Fierro (LANL code number C21030) is a modern C++ code designed to simulate quasi-static 
     solid mechanics problems and transient, compressible material dynamic problems with Lagrangian methods, 

.conda/heffte/cuda/meta.yaml

@@ -4,7 +4,7 @@
 {% set cuda_version = "12.3" %}
 
 package:
-  name: fierro-heffte-cuda
+  name: heffte-cuda
   version: {{ version }}
 
 source:
@@ -50,7 +50,7 @@ about:
   license_family: BSD
   license_file: LICENSE
   summary:
-    LANL Fierro's dependency for EVPFFT solutions
+    LANL Fierro's dependency for EVPFFT solver
   description:
     Fierro (LANL code number C21030) is a modern C++ code designed to simulate quasi-static 
     solid mechanics problems and transient, compressible material dynamic problems with Lagrangian methods, 

.conda/trilinos/cpu/meta.yaml

@@ -3,7 +3,7 @@
 {% set macos_compiler_version = "16" %}
 
 package:
-  name: fierro-trilinos-cpu
+  name: trilinos-cpu
   version: {{ version }}
 
 source:

.etc/conda_build_environment.yaml

@@ -8,3 +8,4 @@ dependencies:
   - boa # For building
   - conda-build
   - anaconda-client # For uploading
+  - python=3.8

.gitattributes

@@ -0,0 +1,22 @@
+dev-utils/** linguist-documentation
+dev-utils/** linguist-documentation
+docs/** linguist-documentation
+integrated-tests/Test-scripts/Solver-Inputs/** linguist-documentation
+integrated-tests/Test-scripts/standard-results/** linguist-documentation
+legacy/** linguist-documentation
+python/stl_files/** linguist-documentation
+scripts/** linguist-documentation
+single-node/cbin/** linguist-documentation
+single-node/scripts/** linguist-documentation
+single-node/src/Explicit-Lagrange/meshes/** linguist-documentation
+single-node/testing/tests-for-Explicit-Lagrange-Kokkos/** linguist-documentation
+single-node-refactor/regression_tests/standard_inputs/** linguist-documentation
+single-node-refactor/regression_tests/standard_results/** linguist-documentation
+src/EVPFFT/example_input_files/** linguist-documentation
+src/EVPFFT/scripts/** linguist-documentation
+src/LS-EVPFFT/example_input_files/** linguist-documentation
+src/LS-EVPFFT/scripts/** linguist-documentation
+src/Mesh-Builder/examples/** linguist-documentation
+src/Parallel-Solvers/Implicit-Lagrange/Mesh_Examples/** linguist-documentation
+src/Parallel-Solvers/Implicit-Lagrange/MueLu_XML_Examples/** linguist-documentation
+src/Parallel-Solvers/Parallel-Explicit/Example_Yaml_Scripts/** linguist-documentation

.github/workflows/build-conda-package.yaml

@@ -53,7 +53,7 @@ jobs:
       #       conda-${{ runner.os }}--${{ runner.arch }}--${{ steps.get-date.outputs.today }}-${{ hashFiles('.etc/conda_build_environment.yaml') }}-${{ env.CACHE_NUMBER }}
       #   env:
       #     CACHE_NUMBER: 1
-      #   id: cache
+      #   id: cached
 
       - name: Update environment
         run:

.github/workflows/fierro-test-no-implicit.yml

@@ -0,0 +1,86 @@
+name: Fierro Test (No Implicit)
+
+# Workflow runs on following successful conda distribution
+on:
+  workflow_run:
+    workflows: [Publish Test, Publish All, Publish Elements, Publish EVPFFT-CPU, Publish EVPFFT-dev, Publish EVPFFT-GPU, Publish FIERRO GUI, Publish Fierro-CPU, Publish Fierro-dev, Publish Heffte, Publish Heffte CUDA, Publish Trilinos-CPU]
+    types:
+      - completed
+  workflow_dispatch:
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        submodules: recursive
+    - name: print trigger event
+      run: |
+        echo "::workflow triggering event name is::" ${{ github.event_name }} 
+    - name: update the package list
+      run:
+        sudo apt-get update
+      shell: bash
+    - name: Install build tools
+      run:
+        sudo apt-get install build-essential
+      shell: bash
+    - name: Install LaPack
+      run:
+        sudo apt-get install libblas-dev liblapack-dev
+      shell: bash
+    - name: Install MPI
+      run: |
+        sudo apt-get install libopenmpi-dev openmpi-bin
+        echo "MPI_OPTS=--oversubscribe" >> $GITHUB_ENV
+    - name: Install cmake
+      run:
+        sudo apt-get -y install cmake
+      shell: bash
+    - name: Install python
+      run:
+        sudo apt-get install python3.6
+      shell: bash
+
+    - name: Set up Miniconda
+      uses: conda-incubator/setup-miniconda@v2
+      with:
+        auto-update-conda: true
+        python-version: 3.8
+
+    - name: Create conda environment
+      run: conda env create -f ./.etc/conda_build_environment.yaml
+
+    - name: Initialize conda
+      run: conda init bash
+
+    - name: Activate conda environment, install Fierro anaconda packages
+      run: |
+        source ~/.bashrc
+        conda activate build-env
+        conda install --solver=classic conda-forge::conda-libmamba-solver conda-forge::libmamba conda-forge::libmambapy conda-forge::libarchive
+        conda install -c conda-forge -c fierromechanics fierro-fe-cpu
+        conda install -c conda-forge -c fierromechanics fierro-evpfft-cpu
+        conda install -c conda-forge -c fierromechanics fierro-gui
+        
+    - name: Verify package dependencies
+      run: |
+        conda info --envs
+        conda list
+
+    - name: Test fierro-parallel-explicit
+      run: |
+        source ~/.bashrc
+        conda activate build-env
+        fierro-parallel-explicit ./src/Parallel-Solvers/Parallel-Explicit/Example_Yaml_Scripts/example_simple.yaml
+      shell: bash
+
+    - name: Test fierro-mesh-builder
+      run: |
+        source ~/.bashrc
+        conda activate build-env
+        fierro-mesh-builder ./src/Mesh-Builder/examples/mesh_Box_16_p3.yaml
+      shell: bash
+
+

.github/workflows/fierro-test.yml

@@ -0,0 +1,106 @@
+name: Fierro Test
+
+# Workflow runs on following successful conda distribution
+on:
+  workflow_run:
+    workflows: [Publish Test, Publish All, Publish Elements, Publish EVPFFT-CPU, Publish EVPFFT-dev, Publish EVPFFT-GPU, Publish FIERRO GUI, Publish Fierro-CPU, Publish Fierro-dev, Publish Heffte, Publish Heffte CUDA, Publish Trilinos-CPU]
+    types:
+      - completed
+  workflow_dispatch:
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        submodules: recursive
+    - name: update the package list
+      run:
+        sudo apt-get update
+      shell: bash
+    - name: Install build tools
+      run:
+        sudo apt-get install build-essential
+      shell: bash
+    - name: Install LaPack
+      run:
+        sudo apt-get install libblas-dev liblapack-dev
+      shell: bash
+    - name: Install MPI
+      run: |
+        sudo apt-get install libopenmpi-dev openmpi-bin
+        echo "MPI_OPTS=--oversubscribe" >> $GITHUB_ENV
+    - name: Install cmake
+      run:
+        sudo apt-get -y install cmake
+      shell: bash
+    - name: Install python
+      run:
+        sudo apt-get install python3.6
+      shell: bash
+    - name: Install dos2unix
+      run:
+        sudo apt-get install dos2unix
+      shell: bash
+
+    - name: Set up Miniconda
+      uses: conda-incubator/setup-miniconda@v2
+      with:
+        auto-update-conda: true
+        python-version: 3.8
+
+    - name: Create conda environment
+      run: conda env create -f ./.etc/conda_build_environment.yaml
+
+    - name: Initialize conda
+      run: conda init bash
+
+    - name: Activate conda environment, install Fierro anaconda packages
+      run: |
+        source ~/.bashrc
+        conda activate build-env
+        conda install --solver=classic conda-forge::conda-libmamba-solver conda-forge::libmamba conda-forge::libmambapy conda-forge::libarchive
+        conda install -c conda-forge -c fierromechanics fierro-fe-cpu
+        conda install -c conda-forge -c fierromechanics fierro-evpfft-cpu
+        conda install -c conda-forge -c fierromechanics fierro-gui 
+        
+    - name: Verify package dependencies
+      run: |
+        conda info --envs
+        conda list
+        
+    - name: Test fierro-parallel-explicit
+      run: |
+        source ~/.bashrc
+        conda activate build-env
+        export OMP_PROC_BIND=spread
+        export OMP_NUM_THREADS=1
+        export OMP_PLACES=threads
+        mpirun -np 1 --bind-to core fierro-parallel-explicit ./src/Parallel-Solvers/Parallel-Explicit/Example_Yaml_Scripts/example_simple.yaml
+      shell: bash
+
+    - name: Test fierro-mesh-builder
+      run: |
+        source ~/.bashrc
+        conda activate build-env
+        fierro-mesh-builder ./src/Mesh-Builder/examples/mesh_Box_16_p3.yaml
+      shell: bash
+
+    - name: Test fierro-parallel-implicit
+      run: |
+        source ~/.bashrc
+        conda activate build-env
+        dos2unix ./Example_Yaml_Scripts/example_implicit_basic.yaml
+        export OMP_PROC_BIND=spread
+        export OMP_NUM_THREADS=1
+        export OMP_PLACES=threads
+        mpirun -np 1 --bind-to core fierro-parallel-implicit ./Example_Yaml_Scripts/example_implicit_basic.yaml
+      working-directory: ./src/Parallel-Solvers/Implicit-Lagrange
+      shell: bash
+
+
+
+

.github/workflows/publish-all.yml

@@ -0,0 +1,37 @@
+name: Publish All
+
+on: workflow_dispatch
+
+jobs:
+  elements:
+    uses: ./.github/workflows/publish-elements.yml
+
+  evpfft-cpu:
+    uses: ./.github/workflows/publish-evpfft-cpu.yml
+
+  evpfft-dev:
+    uses: ./.github/workflows/publish-evpfft-dev.yml
+
+  evpfft-gui:
+    uses: ./.github/workflows/publish-evpfft-gui.yml
+
+  fierro-cpu:
+    uses: ./.github/workflows/publish-fierro-cpu.yml
+
+  fierro-dev:
+    uses: ./.github/workflows/publish-fierro-dev.yml
+
+  fierro-gui:
+    uses: ./.github/workflows/publish-fierro-gui.yml
+
+  heffte-cpu:
+    uses: ./.github/workflows/publish-heffte-cpu.yml
+
+  heffte-cuda:
+    uses: ./.github/workflows/publish-heffte-cuda.yml
+
+  trilinos:
+    uses: ./.github/workflows/publish-trillinos.yml
+
+  voxelizer:
+    uses: ./.github/workflows/publish-voxelizer.yml

.github/workflows/publish-elements.yaml

@@ -1,10 +1,6 @@
 name: 'Publish Elements'
 
 on: 
-  push:
-    paths:
-      - .conda/elements/**
-      - .github/workflows/publish-elements.yaml
   workflow_dispatch:
 
 jobs:

.github/workflows/publish-evpfft-cpu.yaml

@@ -1,11 +1,6 @@
 name: 'Publish EVPFFT-CPU'
 
 on: 
-  push:
-    paths:
-      - .conda/evpfft/**
-      - src/EVPFFT/src/**
-      - .github/workflows/publish-evpfft-cpu.yaml
   workflow_dispatch:
 
 jobs: