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Add OpenVINO model inference when models are run on CPU #72

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Add OpenVINO model inference when models are run on CPU #72

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b9498e9
Add OpenVINO enabled inference
surajpaib Jul 1, 2024
520fe0b
Update model path
surajpaib Jul 1, 2024
80bc162
Merge branch 'lassoan:main' into main
surajpaib Jul 12, 2024
d5a9610
Add global disable for quick testing
surajpaib Jul 17, 2024
dc05d43
Update release paths to forked repo
surajpaib Jul 17, 2024
8836f78
Merge branch 'lassoan:main' into main
surajpaib Jul 18, 2024
44bce83
Update brats
surajpaib Jul 18, 2024
d236f45
Merge branch 'main' of https://github.com/surajpaib/SlicerMONAIAuto3DSeg
surajpaib Jul 18, 2024
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1 change: 1 addition & 0 deletions MONAIAuto3DSeg/MONAIAuto3DSeg.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1074,6 +1074,7 @@ def setupPythonRequirements(self, upgrade=False):
if upgrade:
monaiInstallString += " --upgrade"
slicer.util.pip_install(monaiInstallString)
slicer.util.pip_install("openvino")

self.dependenciesInstalled = True
self.log("Dependencies are set up successfully.")
Expand Down
102 changes: 51 additions & 51 deletions MONAIAuto3DSeg/Resources/Models.json
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Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/abdominal-organs-3mm-v2.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/abdominal-organs-3mm-v2.0.0.zip"
}
],
"segmentationTimeSecGPU": 64.6,
Expand Down Expand Up @@ -53,7 +53,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/abdominal-organs-v2.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/abdominal-organs-v2.0.0.zip"
}
],
"segmentationTimeSecGPU": 95.3,
Expand Down Expand Up @@ -95,7 +95,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/body-v2.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/body-v2.0.0.zip"
}
],
"segmentationTimeSecGPU": 37.6,
Expand All @@ -116,7 +116,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/body-3mm-v2.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/body-3mm-v2.0.0.zip"
}
],
"segmentationTimeSecGPU": 40.7,
Expand All @@ -137,10 +137,10 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/vertebrae-3mm-v2.0.1.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/vertebrae-3mm-v2.0.1.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/vertebrae-3mm-v2.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/vertebrae-3mm-v2.0.0.zip"
}
],
"segmentationTimeSecGPU": 41.0,
Expand Down Expand Up @@ -185,10 +185,10 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/vertebrae-v2.0.1.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/vertebrae-v2.0.1.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/vertebrae-v2.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/vertebrae-v2.0.0.zip"
}
],
"segmentationTimeSecGPU": 62.4,
Expand Down Expand Up @@ -233,13 +233,13 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/mediastinal-anatomy-v2.0.2.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/mediastinal-anatomy-v2.0.2.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/mediastinal-anatomy-v2.0.1.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/mediastinal-anatomy-v2.0.1.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/mediastinal-anatomy-v2.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/mediastinal-anatomy-v2.0.0.zip"
}
],
"segmentationTimeSecGPU": 109.1,
Expand Down Expand Up @@ -281,7 +281,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/mediastinal-anatomy-3mm-v2.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/mediastinal-anatomy-3mm-v2.0.0.zip"
}
],
"segmentationTimeSecGPU": 45.3,
Expand Down Expand Up @@ -325,7 +325,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/whole-head-05mm-v1.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/whole-head-05mm-v1.0.0.zip"
}
],
"segmentationTimeSecGPU": 64.6,
Expand Down Expand Up @@ -358,7 +358,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/whole-head-1mm-v1.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/whole-head-1mm-v1.0.0.zip"
}
],
"segmentationTimeSecGPU": 30,
Expand Down Expand Up @@ -386,10 +386,10 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/whole-body-v1.0.1.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/whole-body-v1.0.1.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/whole-body-v1.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/whole-body-v1.0.0.zip"
}
],
"segmentationTimeSecGPU": 201.9,
Expand Down Expand Up @@ -512,7 +512,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/whole-body-3mm-v1.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/whole-body-3mm-v1.0.0.zip"
}
],
"segmentationTimeSecGPU": 82.3,
Expand Down Expand Up @@ -634,10 +634,10 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/whole-body-v2.0.1.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/whole-body-v2.0.1.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/whole-body-v2.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/whole-body-v2.0.0.zip"
}
],
"segmentationTimeSecGPU": 49.5,
Expand Down Expand Up @@ -773,7 +773,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/whole-body-3mm-v2.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/whole-body-3mm-v2.0.0.zip"
}
],
"segmentationTimeSecGPU": 74.5,
Expand Down Expand Up @@ -909,19 +909,19 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/abdominal-17-v1.4.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/abdominal-17-v1.4.0.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/abdominal-17-v1.3.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/abdominal-17-v1.3.0.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/abdominal-17-v1.2.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/abdominal-17-v1.2.0.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/abdominal-17-v1.1.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/abdominal-17-v1.1.0.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/abdominal-17-v1.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/abdominal-17-v1.0.0.zip"
}
],
"segmentationTimeSecGPU": 83.5,
Expand Down Expand Up @@ -968,10 +968,10 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/prostate-v1.0.1.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/prostate-v1.0.1.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/prostate-v1.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/prostate-v1.0.0.zip"
}
],
"segmentationTimeSecGPU": 30.8,
Expand All @@ -992,7 +992,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/ribs-3mm-v2.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/ribs-3mm-v2.0.0.zip"
}
],
"segmentationTimeSecGPU": 45.5,
Expand Down Expand Up @@ -1037,7 +1037,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/ribs-v2.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/ribs-v2.0.0.zip"
}
],
"segmentationTimeSecGPU": 66.2,
Expand Down Expand Up @@ -1082,7 +1082,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/muscles-3mm-v2.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/muscles-3mm-v2.0.0.zip"
}
],
"segmentationTimeSecGPU": 60.5,
Expand Down Expand Up @@ -1124,7 +1124,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/muscles-v2.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/muscles-v2.0.0.zip"
}
],
"segmentationTimeSecGPU": 88.5,
Expand Down Expand Up @@ -1166,7 +1166,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/cardiac-3mm-v2.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/cardiac-3mm-v2.0.0.zip"
}
],
"segmentationTimeSecGPU": 42.9,
Expand Down Expand Up @@ -1203,7 +1203,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/cardiac-v2.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/cardiac-v2.0.0.zip"
}
],
"segmentationTimeSecGPU": 95.6,
Expand Down Expand Up @@ -1240,7 +1240,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/lungs-3mm-v2.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/lungs-3mm-v2.0.0.zip"
}
],
"segmentationTimeSecGPU": 37.5,
Expand All @@ -1266,19 +1266,19 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/lungs-v2.0.1.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/lungs-v2.0.1.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/lungs-v2.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/lungs-v2.0.0.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/lungs-v1.2.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/lungs-v1.2.0.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/lungs-v1.1.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/lungs-v1.1.0.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/lungs-v1.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/lungs-v1.0.0.zip"
}
],
"segmentationTimeSecGPU": 25.5,
Expand Down Expand Up @@ -1306,13 +1306,13 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/hips-and-spine-v1.2.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/hips-and-spine-v1.2.0.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/hips-and-spine-v1.1.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/hips-and-spine-v1.1.0.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/hips-and-spine-v1.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/hips-and-spine-v1.0.0.zip"
}
],
"segmentationTimeSecGPU": 86.9,
Expand Down Expand Up @@ -1358,10 +1358,10 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/aorta-v1.1.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/aorta-v1.1.0.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/aorta-v1.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/aorta-v1.0.0.zip"
}
],
"segmentationTimeSecGPU": 60.0,
Expand All @@ -1381,7 +1381,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/icrh-v1.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/icrh-v1.0.0.zip"
}
],
"segmentationTimeSecGPU": 21.7,
Expand All @@ -1407,7 +1407,7 @@
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/anatomy_and_icrh-v1.0.1.zip"
},
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/anatomy_and_icrh-v1.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/anatomy_and_icrh-v1.0.0.zip"
}
],
"segmentationTimeSecGPU": 40.1,
Expand Down Expand Up @@ -1459,7 +1459,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/brats-gli-v1.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/brats-gli-v1.0.0.zip"
}
],
"segmentationTimeSecGPU": 32.4,
Expand Down Expand Up @@ -1499,7 +1499,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/brats-men-v1.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/brats-men-v1.0.0.zip"
}
],
"segmentationTimeSecGPU": 36.2,
Expand Down Expand Up @@ -1539,7 +1539,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/brats-met-v1.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/brats-met-v1.0.0.zip"
}
],
"segmentationTimeSecGPU": 39.5,
Expand Down Expand Up @@ -1579,7 +1579,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/brats-ped-v1.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/brats-ped-v1.0.0.zip"
}
],
"segmentationTimeSecGPU": 42.0,
Expand Down Expand Up @@ -1619,7 +1619,7 @@
],
"versions": [
{
"url": "https://github.com/lassoan/SlicerMONAIAuto3DSeg/releases/download/Models/brats-ssa-v1.0.0.zip"
"url": "https://github.com/surajpaib/SlicerMONAIAuto3DSeg/releases/download/Models/brats-ssa-v1.0.0.zip"
}
],
"segmentationTimeSecGPU": 43.2,
Expand Down
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