vcf errors

[gevro]

Hi,
The final vcf is giving me these errors when I look at it with bcftools:

[W::bcf_hrec_check] Invalid tag name: "'SampleID'"
[W::bcf_hrec_check] Invalid tag name: "Compound_htz(sample)"
[W::bcf_hrec_check] Invalid tag name: "Count_hom(sample)"
[W::bcf_hrec_check] Invalid tag name: "Count_htz(sample)"
[W::bcf_hrec_check] Invalid tag name: "Count_htz/allHom(sample)"
[W::bcf_hrec_check] Invalid tag name: "Count_htz/total(cohort)"
[W::bcf_hrec_check] Invalid tag name: "Count_total(cohort)"
##fileformat=VCFv4.2
[W::vcf_parse_format] FORMAT 'AD' at 1:90258 is not defined in the header, assuming Type=String
[W::vcf_parse_format] FORMAT 'DP' at 1:90258 is not defined in the header, assuming Type=String
[W::vcf_parse_format] FORMAT 'PS' at 1:136554 is not defined in the header, assuming Type=String

I suspect there are bugs in how annotSV is defining the vcf headers.

[gevro]

Note, if this is a variantconvert bug, maybe it would be best for annotsv to natively output to vcf? Since variantconvert bugs would take a long time to fix. Thanks