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Download the data required for the course here: https://drive.google.com/drive/folders/1-1-WJ0_o0QI4xrBS8hpqqsS8Obo2iEgx?usp=drive_link

We will use Python in google co-lab for the first day

  • Create a google ID first if you don't have one
  • Co-lab will also run better if you use google chrome as your browser
  • Open the Day_1.ipynb and click the launch in google colab button on the top left corner
  • Solutions will be made available at the end of the day.

We will use the data file 'Hufallopiantube.h5ad'

  • Download this to your computer and place it in your google drive

The second, third, and fourth day we will use R in google co-lab We will need 'X.csv', 'vars.csv' and 'obs.csv' - These contain the gene expression matrix, the gene names, and the observations/metadata

  • Download these to your computer, and upload them to the Runtime session storage, the X.csv will take a while to upload
  • Do remember to change Runtime type to R

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