column mapping should work on compressed files

loculus-project · Jan 8, 2025 · f93e5c3 · f93e5c3
1 parent 15ddb24
commit f93e5c3
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/website/src/components/Submission/DataUploadForm.tsx b/website/src/components/Submission/DataUploadForm.tsx
@@ -182,8 +182,7 @@ const InnerDataUploadForm = ({
         let finalMetadataFile = metadataFile.inner();
 
         if (columnMapping !== null) {
-            // TODO here we want to pass in the Processed File
-            finalMetadataFile = await columnMapping.applyTo(metadataFile.inner());
+            finalMetadataFile = await columnMapping.applyTo(metadataFile);
         }
 
         switch (action) {

diff --git a/website/src/components/Submission/FileUpload/ColumnMapping.ts b/website/src/components/Submission/FileUpload/ColumnMapping.ts
@@ -1,4 +1,5 @@
 import { stringSimilarity } from 'string-similarity-js';
+import { ProcessedFile } from './fileProcessing';
 
 export class ColumnMapping {
     private readonly map: ReadonlyMap<string, string>;
@@ -78,7 +79,7 @@ export class ColumnMapping {
     }
 
     /* Apply this mapping to a TSV file, returning a new file with remapped columns. */
-    public async applyTo(tsvFile: File): Promise<File> {
+    public async applyTo(tsvFile: ProcessedFile): Promise<File> {
         const text = await tsvFile.text();
         const inputRows = text.split('\n');
         const headersInFile = inputRows.splice(0, 1)[0].split('\t');